Protein: | SPT3 |
Organism: | Saccharomyces cerevisiae |
Length: | 337 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPT3.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..337] | [1..337] |
|
0.0 | [3..337] | [5..328] |
|
0.0 | [1..337] | [1..328] |
|
0.0 | [14..337] | [1..306] |
|
0.0 | [3..337] | [6..307] |
|
0.0 | [3..337] | [6..307] |
|
2.0E-86 | [7..312] | [26..293] |
|
2.0E-71 | [9..313] | [104..359] |
Region A: Residues: [1-50] |
1 11 21 31 41 51 | | | | | | 1 MMDKHKYRVE IQQMMFVSGE INDPPVETTS LIEDIVRGQV IEILLQSNKT |
Detection Method: | |
Confidence: | 13.39794 |
Match: | 1bh8A_ |
Description: | TAF(II)18 |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
general RNA polymerase II transcription factor activity | 6.26683920136262 | bayes_pls_golite062009 |
lysine N-acetyltransferase activity | 5.93249134612505 | bayes_pls_golite062009 |
histone acetyltransferase activity | 5.93249134612505 | bayes_pls_golite062009 |
N-acetyltransferase activity | 4.49084162254966 | bayes_pls_golite062009 |
DNA binding | 4.24660531286828 | bayes_pls_golite062009 |
N-acyltransferase activity | 4.2172829451557 | bayes_pls_golite062009 |
nucleic acid binding | 4.14026521609645 | bayes_pls_golite062009 |
transcription regulator activity | 3.91807454227165 | bayes_pls_golite062009 |
acetyltransferase activity | 3.91533222675137 | bayes_pls_golite062009 |
acyltransferase activity | 3.38996237245502 | bayes_pls_golite062009 |
transferase activity, transferring acyl groups other than amino-acyl groups | 3.35419529667223 | bayes_pls_golite062009 |
transferase activity, transferring acyl groups | 3.18312128320637 | bayes_pls_golite062009 |
binding | 3.14832737946099 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 3.02428691626433 | bayes_pls_golite062009 |
transcription factor activity | 2.39322722597434 | bayes_pls_golite062009 |
transcription activator activity | 1.12739348005764 | bayes_pls_golite062009 |
nucleotidyltransferase activity | 1.03060091158028 | bayes_pls_golite062009 |
protein binding | 1.01897642648285 | bayes_pls_golite062009 |
transcription factor binding | 1.01773884290535 | bayes_pls_golite062009 |
transcription coactivator activity | 0.976797801726735 | bayes_pls_golite062009 |
transcription cofactor activity | 0.840442755533537 | bayes_pls_golite062009 |
transcription initiation factor activity | 0.718301463460921 | bayes_pls_golite062009 |
transcription repressor activity | 0.621482805601238 | bayes_pls_golite062009 |
transferase activity, transferring phosphorus-containing groups | 0.450418553112188 | bayes_pls_golite062009 |
histone binding | 0.184823910505751 | bayes_pls_golite062009 |
transferase activity | 0.137803992484684 | bayes_pls_golite062009 |
sequence-specific DNA binding | 0.0585868733603467 | bayes_pls_golite062009 |
Region A: Residues: [51-109] |
1 11 21 31 41 51 | | | | | | 1 AHLRGSRSIL PEDVIFLIRH DKAKVNRLRT YLSWKDLRKN AKDQDASAGV ASGTGNPGA |
Detection Method: | |
Confidence: | 6.327902 |
Match: | PF02269 |
Description: | Transcription initiation factor IID, 18kD subunit |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Term | Confidence | Notes |
general RNA polymerase II transcription factor activity | 6.26683920136262 | bayes_pls_golite062009 |
lysine N-acetyltransferase activity | 5.93249134612505 | bayes_pls_golite062009 |
histone acetyltransferase activity | 5.93249134612505 | bayes_pls_golite062009 |
N-acetyltransferase activity | 4.49084162254966 | bayes_pls_golite062009 |
DNA binding | 4.24660531286828 | bayes_pls_golite062009 |
N-acyltransferase activity | 4.2172829451557 | bayes_pls_golite062009 |
nucleic acid binding | 4.14026521609645 | bayes_pls_golite062009 |
transcription regulator activity | 3.91807454227165 | bayes_pls_golite062009 |
acetyltransferase activity | 3.91533222675137 | bayes_pls_golite062009 |
acyltransferase activity | 3.38996237245502 | bayes_pls_golite062009 |
transferase activity, transferring acyl groups other than amino-acyl groups | 3.35419529667223 | bayes_pls_golite062009 |
transferase activity, transferring acyl groups | 3.18312128320637 | bayes_pls_golite062009 |
binding | 3.14832737946099 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 3.02428691626433 | bayes_pls_golite062009 |
transcription factor activity | 2.39322722597434 | bayes_pls_golite062009 |
transcription activator activity | 1.12739348005764 | bayes_pls_golite062009 |
nucleotidyltransferase activity | 1.03060091158028 | bayes_pls_golite062009 |
protein binding | 1.01897642648285 | bayes_pls_golite062009 |
transcription factor binding | 1.01773884290535 | bayes_pls_golite062009 |
transcription coactivator activity | 0.976797801726735 | bayes_pls_golite062009 |
transcription cofactor activity | 0.840442755533537 | bayes_pls_golite062009 |
transcription initiation factor activity | 0.718301463460921 | bayes_pls_golite062009 |
transcription repressor activity | 0.621482805601238 | bayes_pls_golite062009 |
transferase activity, transferring phosphorus-containing groups | 0.450418553112188 | bayes_pls_golite062009 |
histone binding | 0.184823910505751 | bayes_pls_golite062009 |
transferase activity | 0.137803992484684 | bayes_pls_golite062009 |
sequence-specific DNA binding | 0.0585868733603467 | bayes_pls_golite062009 |
Region A: Residues: [110-337] |
1 11 21 31 41 51 | | | | | | 1 GGEDDLKKAG GGEKDEKDGG NMMKVKKSQI KLPWELQFMF NEHPLENNDD NDDMDEDERE 60 61 ANIVTLKRLK MADDRTRNMT KEEYVHWSDC RQASFTFRKN KRFKDWSGIS QLTEGKPHDD 120 121 VIDILGFLTF EIVCSLTETA LKIKQREQVL QTQKDKSQQS SQDNTNFEFA SSTLHRKKRL 180 181 FDGPENVINP LKPRHIEEAW RVLQTIDMRH RALTNFKGGR LSSKPIIM |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.