Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRP101.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..621] | [1..621] |
|
|
0.0 | [1..620] | [1..634] |
|
|
0.0 | [1..620] | [1..636] |
|
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3.0E-95 | [1..619] | [1..555] |
|
|
7.0E-91 | [1..563] | [1..573] |
|
|
3.0E-88 | [1..619] | [1..568] |
|
|
1.0E-86 | [1..620] | [1..633] |
|
Region A: Residues: [1-215] |
1 11 21 31 41 51
| | | | | |
1 MFDQLAVFTP QGQVLYQYNC LGKKFSEIQI NSFISQLITS PVTRKESVAN ANTDGFDFNL 60
61 LTINSEHKNS PSFNALFYLN KQPELYFVVT FAEQTLELNQ ETQQTLALVL KLWNSLHLSE 120
121 SILKNRQGQN EKNKHNYVDI LQGIEDDLKK FEQYFRIKYE ESIKQDHINP DNFTKNGSVP 180
181 QSHNKNTKKK LRDTKGKKQS TGNVGSGRKW GRDGG
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| signal recognition particle binding | 6.13359612945359 | bayes_pls_golite062009 |
| ribonucleoprotein binding | 3.69979261496156 | bayes_pls_golite062009 |
| palmitoyltransferase activity | 2.39665981402803 | bayes_pls_golite062009 |
| protein-cysteine S-palmitoleyltransferase activity | 2.13678994750168 | bayes_pls_golite062009 |
| protein-cysteine S-acyltransferase activity | 2.13678994750168 | bayes_pls_golite062009 |
| protein transporter activity | 2.04806587835812 | bayes_pls_golite062009 |
| transporter activity | 1.71943098913274 | bayes_pls_golite062009 |
| SNAP receptor activity | 1.47915598483249 | bayes_pls_golite062009 |
| protein binding | 1.08917223347521 | bayes_pls_golite062009 |
| binding | 1.08343499631215 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.939682472116899 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.131410992694836 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.0936690070284361 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.0846345824909659 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.0820309452260982 | bayes_pls_golite062009 |
|
Region A: Residues: [216-272] |
1 11 21 31 41 51
| | | | | |
1 MLDEMNHEDA AKLDFSSSNS HNSSQVALDS TINKDSFGDR TEGGDFLIKE IDDLLSS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.434 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.398 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.539 | a.140.4 | Recombination endonuclease VII, C-terminal and dimerization domains |
| View | Download | 0.354 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.289 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.283 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.235 | a.140.2 | SAP domain |
| View | Download | 0.233 | a.4.1 | Homeodomain-like |
| View | Download | 0.225 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
|
Region A: Residues: [273-293] |
1 11 21 31 41 51
| | | | | |
1 HKDEITSGNE AKNSGYVSTA F
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Region B: Residues: [363-621] |
1 11 21 31 41 51
| | | | | |
1 TKALTQILTP GVSVDLLREI QSKRSKKDEE GKCDPYVFSI VGVNGVGKST NLSKLAFWLL 60
61 QNNFKVLIVA CDTFRSGAVE QLRVHVENLA QLMDDSHVRG SKNKRGKTGN DYVELFEAGY 120
121 GGSDLVTKIA KQAIKYSRDQ NFDIVLMDTA GRRHNDPTLM SPLKSFADQA KPDKIIMVGE 180
181 ALVGTDSVQQ AKNFNDAFGK GRNLDFFIIS KCDTVGEMLG TMVNMVYATG IPILFVGVGQ 240
241 TYTDLRTLSV KWAVNTLMS
|
| Detection Method: | |
| Confidence: | 271.491979 |
| Match: | 1fts__ |
| Description: | Signal recognition particle receptor, FtsY; GTPase domain of the signal recognition particle receptor FtsY |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [294-362] |
1 11 21 31 41 51
| | | | | |
1 GFLQKHVLGN KTINESDLKS VLEKLTQQLI TKNVAPEAAD YLTQQVSHDL VGSKTANWTS 60
61 VENTARESL
|
| Detection Method: | |
| Confidence: | 271.491979 |
| Match: | 1fts__ |
| Description: | Signal recognition particle receptor, FtsY; GTPase domain of the signal recognition particle receptor FtsY |
| Matching Structure (courtesy of the PDB): |
|
