| Protein: | GCD6 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 712 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GCD6.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..704] | [1..704] |
|
|
0.0 | [7..704] | [5..714] |
|
|
0.0 | [2..711] | [15..716] |
|
|
0.0 | [2..701] | [16..711] |
|
|
0.0 | [14..703] | [5..667] |
|
|
0.0 | [65..701] | [1..631] |
|
|
0.0 | [24..704] | [6..659] |
|
Region A: Residues: [1-299] |
1 11 21 31 41 51
| | | | | |
1 MAGKKGQKKS GLGNHGKNSD MDVEDRLQAV VLTDSYETRF MPLTAVKPRC LLPLANVPLI 60
61 EYTLEFLAKA GVHEVFLICS SHANQINDYI ENSKWNLPWS PFKITTIMSP EARCTGDVMR 120
121 DLDNRGIITG DFILVSGDVL TNIDFSKMLE FHKKMHLQDK DHISTMCLSK ASTYPKTRTI 180
181 EPAAFVLDKS TSRCIYYQDL PLPSSREKTS IQIDPELLDN VDEFVIRNDL IDCRIDICTS 240
241 HVPLIFQENF DYQSLRTDFV KGVISSDILG KHIYAYLTDE YAVRVESWQT YDTISQDFL
|
| Detection Method: |  |
| Confidence: | 116.917458 |
| Match: | 1hv9A_ |
| Description: | N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain; N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| uridylyltransferase activity | 3.74072767898515 | bayes_pls_golite062009 |
| transferase activity, transferring hexosyl groups | 2.70047942699289 | bayes_pls_golite062009 |
| UTP:glucose-1-phosphate uridylyltransferase activity | 2.65167602524122 | bayes_pls_golite062009 |
| UTP-monosaccharide-1-phosphate uridylyltransferase activity | 2.46432078102948 | bayes_pls_golite062009 |
| UDP-glycosyltransferase activity | 2.33861720107822 | bayes_pls_golite062009 |
| transferase activity | 2.17535315350752 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 2.00651267140641 | bayes_pls_golite062009 |
| catalytic activity | 1.88676710996045 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 1.49149681135671 | bayes_pls_golite062009 |
| acetylgalactosaminyltransferase activity | 1.33788133706753 | bayes_pls_golite062009 |
| acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity | 1.17181714897181 | bayes_pls_golite062009 |
| polypeptide N-acetylgalactosaminyltransferase activity | 1.10309252319727 | bayes_pls_golite062009 |
| binding | 1.09657219604879 | bayes_pls_golite062009 |
| mannosyltransferase activity | 0.91123217364068 | bayes_pls_golite062009 |
| transferase activity, transferring glycosyl groups | 0.897978517422275 | bayes_pls_golite062009 |
| acyltransferase activity | 0.741838450922005 | bayes_pls_golite062009 |
| transferase activity, transferring acyl groups other than amino-acyl groups | 0.717805296858439 | bayes_pls_golite062009 |
| transferase activity, transferring acyl groups | 0.555398952276587 | bayes_pls_golite062009 |
| UDP-N-acetylglucosamine diphosphorylase activity | 0.513376694534047 | bayes_pls_golite062009 |
| O-acyltransferase activity | 0.319932817519902 | bayes_pls_golite062009 |
| mannose-phosphate guanylyltransferase activity | 0.2363835251362 | bayes_pls_golite062009 |
| cytidylyltransferase activity | 0.218759888732981 | bayes_pls_golite062009 |
| guanylyltransferase activity | 0.0539392112504681 | bayes_pls_golite062009 |
|
Region A: Residues: [300-516] |
1 11 21 31 41 51
| | | | | |
1 GRWCYPLVLD SNIQDDQTYS YESRHIYKEK DVVLAQSCKI GKCTAIGSGT KIGEGTKIEN 60
61 SVIGRNCQIG ENIRIKNSFI WDDCIIGNNS IIDHSLIASN ATLGSNVRLN DGCIIGFNVK 120
121 IDDNMDLDRN TKISASPLKN AGSRMYDNES NEQFDQDLDD QTLAVSIVGD KGVGYIYESE 180
181 VSDDEDSSTE ACKEINTLSN QLDELYLSDD SISSATK
|
| Detection Method: | |
| Confidence: | 116.917458 |
| Match: | 1hv9A_ |
| Description: | N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain; N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| translation initiation factor activity | 9.37171190530754 | bayes_pls_golite062009 |
| translation regulator activity | 5.35226950142169 | bayes_pls_golite062009 |
| binding | 3.0667965351474 | bayes_pls_golite062009 |
| nucleic acid binding | 2.34284977509828 | bayes_pls_golite062009 |
| transcription regulator activity | 1.76231475025891 | bayes_pls_golite062009 |
| protein binding | 1.73688475473996 | bayes_pls_golite062009 |
| RNA cap binding | 1.73309326409609 | bayes_pls_golite062009 |
| DNA binding | 1.62032607987786 | bayes_pls_golite062009 |
| transcription factor activity | 0.923253759652909 | bayes_pls_golite062009 |
| structural molecule activity | 0.908029258648777 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.803700928110921 | bayes_pls_golite062009 |
| mRNA binding | 0.46864854653143 | bayes_pls_golite062009 |
| RNA binding | 0.40024158562931 | bayes_pls_golite062009 |
| transcription activator activity | 0.0232727461674547 | bayes_pls_golite062009 |
|
Region A: Residues: [517-626] |
1 11 21 31 41 51
| | | | | |
1 KTKKRRTMSV NSIYTDREEI DSEFEDEDFE KEGIATVERA MENNHDLDTA LLELNTLRMS 60
61 MNVTYHEVRI ATITALLRRV YHFIATQTLG PKDAVVKVFN QWGLLFKRQA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [627-712] |
1 11 21 31 41 51
| | | | | |
1 FDEEEYIDLM NIIMEKIVEQ SFDKPDLILF SALVSLYDND IIEEDVIYKW WDNVSTDPRY 60
61 DEVKKLTVKW VEWLQNADEE SSSEEE
|
| Detection Method: | |
| Confidence: | 27.60206 |
| Match: | PF02020 |
| Description: | eIF4-gamma/eIF5/eIF2-epsilon |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
