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Protein Overview: gi|7488395, gi|3...

General Information:
Name(s) found: gi|7488395 [NCBI NR]
gi|34098787 [NCBI NR]
gi|3033392 [NCBI NR]
gi|22655208 [NCBI NR]
gi|15226869 [NCBI NR]
Description(s) found:
Found 15 descriptions.
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  • pir||T00478 probable translation regulator GCD6 F19I3.20 - Arabidopsis thaliana [NCBI NR]
  • gi|34098787|gb|AAQ56776.1| At2g34970 [Arabidopsis thaliana] [NCBI NR]
  • gi|3033392|gb|AAC12836.1| putative translation initiation factor eIF-2B epsilon subunit [Arabidopsis thaliana] [NCBI NR]
  • gi|22655208|gb|AAM98194.1| putative translation initiation factor eIF-2B epsilon subunit [Arabidopsis thaliana] [NCBI NR]
  • gi|15226869|ref|NP_181042.1| eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 730 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: biosynthetic process [IEA]
    regulation of translational initiation [ISS]
    Molecular Function: translation initiation factor activity [ISS]
    nucleotidyltransferase activity [IEA]
    transferase activity [IEA]
    binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAQKKGGAA ARVSEDAEVQ SRHRLQAILL ADSFATKFRP VTLERPKVLL PIVNVPMIDY  60
   61 TLAWLESAGI EEVFVFCCAH SMQVIEYLEK SEWYSHPNLL VRTIESHKSI SAGDALRYMY 120
  121 EQQTETSQIQ GDFVLVSGDT VSNMPLADLI QEHRERKKKD EKAIMTMVIK QSKSSPLTHQ 180
  181 SRLGTDQLFI AVDPLTKQLL HYEEDKIDHP SGSVCLEKSL LDTNPSVLVC NDMQDCYIDI 240
  241 CSPEVLSLFE DNFDYQHLRR HFVKGVLVDD IMGYKIFTHE IHSSYAGRID NFRSYDTVSK 300
  301 DIIQRWTYPY VPDINFSGNR PLKLGRQGIY KASDVVQSRS ADVGASTVIG YGTKIGHGDK 360
  361 IMNSVIGNGC SIGSNVVIEG SYIWNNVTIE DGCEIRNAIV CDGVKIRAGA VLQPGVVLSF 420
  421 NVVVGRDFVV PAYSKVSLLQ QPTTEDSDEE LEYADSSSGT ADHLSGLNLQ MESKASELGP 480
  481 DGAGYIWEVC EGAHDEEWKH SVAPIPKDKL SEITQAIDDD DTDDESVVPT SGELKSDADS 540
  541 INTDVNDPND DYYYFEKEVE GTVLRAVEEN IKVDLVTMEI NGLRLSFNME SADCAGATFF 600
  601 SMIKLALDTP HNSGSELYKN AASIITKWKD LLGFYAKKID EQIEVIMKFE EMCQESHKEL 660
  661 GPLFTQILHL LYDKDVLQED AILRWEEEKA GADEADKVYL KQCDTFIQWL KEASEEEDED 720
  721 DEDEEEEEDN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..522] PSI-BLAST 67.522879 N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain; N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
    2 View Details [523..571] FFAS03 1.39 CRYSTAL STRUCTURE OF THE CATALYTIC FRAGMENT OF EUKARYOTIC INITIATION FACTOR 2B EPSILON
    3 View Details [572..730] PSI-BLAST 29.0 CRYSTAL STRUCTURE OF THE CATALYTIC FRAGMENT OF EUKARYOTIC INITIATION FACTOR 2B EPSILON

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transferase activity
    		•  2.17535315350752 bayes_pls_golite062009
  • catalytic activity
    		•  1.88676710996045 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  1.86990263440735 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  1.49149681135671 bayes_pls_golite062009
  • binding
    		•  1.09657219604879 bayes_pls_golite062009
  • protein binding
    		•  0.967722609820275 bayes_pls_golite062009
  • transferase activity, transferring hexosyl groups
    		•  0.796949457473955 bayes_pls_golite062009
  • acyltransferase activity
    		•  0.741838450922005 bayes_pls_golite062009
  • transferase activity, transferring acyl groups other than amino-acyl groups
    		•  0.717805296858439 bayes_pls_golite062009
  • UDP-glycosyltransferase activity
    		•  0.619458068514795 bayes_pls_golite062009
  • transferase activity, transferring acyl groups
    		•  0.555398952276587 bayes_pls_golite062009
  • O-acyltransferase activity
    		•  0.319932817519902 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • translation initiation factor activity
    		•  9.37171190530754 bayes_pls_golite062009
  • translation regulator activity
    		•  5.35226950142169 bayes_pls_golite062009
  • structural molecule activity
    		•  4.37969512292045 bayes_pls_golite062009
  • binding
    		•  3.0667965351474 bayes_pls_golite062009
  • protein binding
    		•  2.78733902345842 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.34284977509828 bayes_pls_golite062009
  • RNA binding
    		•  1.98024495780436 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.76231475025891 bayes_pls_golite062009
  • RNA cap binding
    		•  1.73309326409609 bayes_pls_golite062009
  • mRNA binding
    		•  1.71342954033223 bayes_pls_golite062009
  • DNA binding
    		•  1.62032607987786 bayes_pls_golite062009
  • transcription activator activity
    		•  1.23830945970239 bayes_pls_golite062009
  • transcription factor activity
    		•  0.923253759652909 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.803700928110921 bayes_pls_golite062009
  • protein phosphatase binding
    		•  0.18767619609331 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle