Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDR049W.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..632] | [1..632] |
|
|
0.0 | [11..631] | [2..600] |
|
|
0.0 | [15..579] | [18..526] |
|
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0.0 | [19..429] | [15..383] |
|
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3.0E-95 | [30..599] | [4..581] |
|
|
4.0E-44 | [72..226] | [4..180] |
|
|
8.0E-43 | [72..201] | [4..151] |
|
Region A: Residues: [1-187] |
1 11 21 31 41 51
| | | | | |
1 MNSQKASKMT GSLKKNDLYI FDLSEQLLNS LKLMSFDSTL REVEVEKTSD NDRNKESGDL 60
61 QIARKKVTSN VMRCSVCQMS FDSRNEQKAH YQTDYHLMNV KRNLRGLDIL SVEEFDALIS 120
121 KEHGIKSEDE NSGGEQTSSD HEESEEASDR DPDLQTNNYM ETIIENDLQK LGFQKDESDA 180
181 ISHINTQ
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| nucleic acid binding | 2.85972242708612 | bayes_pls_golite062009 |
| transcription regulator activity | 2.77701617604772 | bayes_pls_golite062009 |
| DNA binding | 2.71411659179983 | bayes_pls_golite062009 |
| binding | 1.97525193898847 | bayes_pls_golite062009 |
| transcription factor activity | 1.90143001800384 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.06438483834477 | bayes_pls_golite062009 |
| transcription activator activity | 0.888241744617002 | bayes_pls_golite062009 |
| protein binding | 0.721263040163177 | bayes_pls_golite062009 |
| transcription repressor activity | 0.375362589875489 | bayes_pls_golite062009 |
| catalytic activity | 0.263007611601737 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.226250920465406 | bayes_pls_golite062009 |
| transcription factor binding | 0.191965432731838 | bayes_pls_golite062009 |
| chromatin binding | 0.131327938577204 | bayes_pls_golite062009 |
|
Region A: Residues: [188-305] |
1 11 21 31 41 51
| | | | | |
1 SPYIYFKSKY LQKNEVLAIY KSLFNKRSLS NPNEALTFWN SQENPMAISA LFMVGGGHFA 60
61 GAIVSHQRLN VKGNAHKKDE TLIEQAVNFL EHKTFHRYTT RRKQGGSQSA MDNAKGKA
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| binding | 1.58699086730647 | bayes_pls_golite062009 |
| protein binding | 1.41750957807465 | bayes_pls_golite062009 |
| transcription regulator activity | 0.668531056539717 | bayes_pls_golite062009 |
| nucleic acid binding | 0.403559033288365 | bayes_pls_golite062009 |
| DNA binding | 0.186657583240225 | bayes_pls_golite062009 |
| ligase activity | 0.0845684108313678 | bayes_pls_golite062009 |
| transcription factor binding | 0.0182460237384001 | bayes_pls_golite062009 |
|
Region A: Residues: [306-462] |
1 11 21 31 41 51
| | | | | |
1 NSAGSALRRY NESALKTDIQ GVLKDWEPYL SKCDNIFIRA RNVSDKKIFT DNTVLNKGDE 60
61 RIKSFPFTTN RPTVLELKKA WCELSYLKIL PKPEPLAVKE TVQKLEVSNK KDEFKEKQEP 120
121 LLEEIQTEEI ISLLKKGRAP LLISFLKKNK LDGNFRL
|
| Detection Method: | |
| Confidence: | 20.522879 |
| Match: | 1nfiE_ |
| Description: | I-kappa-B-alpha |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [463-542] |
1 11 21 31 41 51
| | | | | |
1 KPESKYSLTP TMLHYASQQG MKQMALILLS NIKCDPTIKN RLGRTAWDLN RNDDVRHAFQ 60
61 IARYNLGESF TNWDETHIGQ
|
| Detection Method: | |
| Confidence: | 20.522879 |
| Match: | 1nfiE_ |
| Description: | I-kappa-B-alpha |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [543-632] |
1 11 21 31 41 51
| | | | | |
1 PLSREQVDEI NEKKKAIENE KAEKLIKLEL EAAKEKQRFA KDAERGPGKK LTNIPSIQQQ 60
61 NLNSLTDEQR RRLMREQRAR AAEERMKKKY
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.674 | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.553 | a.24.4 | Hemerythrin |
| View | Download | 0.557 | a.28.2 | Colicin E immunity proteins |
| View | Download | 0.566 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.881 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.525 | a.47.2 | t-snare proteins |
| View | Download | 0.524 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.524 | a.19.1 | Fertilization protein |
| View | Download | 0.510 | a.47.2 | t-snare proteins |
| View | Download | 0.440 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.422 | a.109.1 | Class II MHC-associated invariant chain ectoplasmic trimerization domain |
| View | Download | 0.409 | i.11.1 | Computational models partly based on NMR data |
| View | Download | 0.400 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.395 | a.24.4 | Hemerythrin |
| View | Download | 0.395 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.382 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.379 | i.11.1 | Computational models partly based on NMR data |
| View | Download | 0.372 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.363 | a.7.7 | BAG domain |
| View | Download | 0.337 | a.47.2 | t-snare proteins |
| View | Download | 0.336 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.325 | a.24.4 | Hemerythrin |
| View | Download | 0.325 | a.24.4 | Hemerythrin |
| View | Download | 0.319 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.319 | a.29.2 | Bromodomain |
| View | Download | 0.314 | a.2.10 | Epsilon subunit of F1F0-ATP synthase C-terminal domain |
| View | Download | 0.314 | a.2.10 | Epsilon subunit of F1F0-ATP synthase C-terminal domain |
| View | Download | 0.311 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.306 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.304 | a.26.1 | 4-helical cytokines |
| View | Download | 0.303 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.302 | a.91.1 | Regulator of G-protein signalling, RGS |
| View | Download | 0.301 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.300 | a.3.1 | Cytochrome c |
| View | Download | 0.296 | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.295 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.286 | a.7.5 | Tubulin chaperone cofactor A |
| View | Download | 0.285 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.283 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.283 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.281 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.267 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.266 | a.7.7 | BAG domain |
| View | Download | 0.265 | a.28.2 | Colicin E immunity proteins |
| View | Download | 0.265 | a.24.4 | Hemerythrin |
| View | Download | 0.262 | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.259 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.259 | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.255 | a.47.2 | t-snare proteins |
| View | Download | 0.252 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.250 | d.53.1 | Ribosomal protein S3 C-terminal domain |
| View | Download | 0.246 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.242 | a.11.1 | Acyl-CoA binding protein |
| View | Download | 0.239 | a.24.4 | Hemerythrin |
| View | Download | 0.239 | a.7.8 | GAT domain |
| View | Download | 0.238 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.238 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.237 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.237 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.236 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.235 | a.28.2 | Colicin E immunity proteins |
| View | Download | 0.235 | a.7.7 | BAG domain |
| View | Download | 0.233 | a.25.1 | Ferritin-like |
| View | Download | 0.233 | d.74.1 | Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) |
| View | Download | 0.232 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.232 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.230 | a.2.10 | Epsilon subunit of F1F0-ATP synthase C-terminal domain |
| View | Download | 0.229 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.228 | a.24.3 | Cytochromes |
| View | Download | 0.227 | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.227 | a.118.14 | FliG |
| View | Download | 0.223 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.221 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.220 | c.78.2 | Aspartate/glutamate racemase |
| View | Download | 0.219 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.219 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.217 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.217 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.216 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.215 | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.213 | a.7.8 | GAT domain |
| View | Download | 0.213 | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.212 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.211 | a.7.7 | BAG domain |
| View | Download | 0.211 | a.2.10 | Epsilon subunit of F1F0-ATP synthase C-terminal domain |
| View | Download | 0.210 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.207 | d.57.1 | DNA damage-inducible protein DinI |
| View | Download | 0.205 | a.47.2 | t-snare proteins |
| View | Download | 0.204 | a.24.4 | Hemerythrin |
| View | Download | 0.204 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.204 | a.11.1 | Acyl-CoA binding protein |
| View | Download | 0.204 | c.78.2 | Aspartate/glutamate racemase |
| View | Download | 0.201 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
