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Protein Overview: gi|29824279, gi|...

General Information:
Name(s) found: gi|8570444 [NCBI NR]
gi|29824279 [NCBI NR]
gi|26452448 [NCBI NR]
gi|25518346 [NCBI NR]
gi|18378900 [NCBI NR]
Description(s) found:
Found 14 descriptions.
SHOW ALL
  • gi|8570444|gb|AAF76471.1|AC020622_5 Contains similarity to an unnamed protein from Homo sapiens gb|AK001277 and contains an Ank repeat PF|00023 domain. [Arabidopsis thaliana] [NCBI NR]
  • gi|29824279|gb|AAP04100.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|26452448|dbj|BAC43309.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • pir||B86151 hypothetical protein F22M8.6 - Arabidopsis thaliana [NCBI NR]
  • gi|18378900|ref|NP_563641.1| zinc finger protein-related [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 580 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA]
    Biological Process: biological_process [ND]
    Molecular Function: zinc ion binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTGAAATT EIGNPEYKQP RSIFDLTADF FDSCRLSNPS ETQSAFGPPK TFDPEEAEED  60
   61 KSSKDGVILD RWTCNTCKIE FLSLQDQRYH FKSDIHRLNI KLSVAGKAIL KEEDVDELTS 120
  121 ESVQDYDVSS ISGSEDEAET RPPSFHFDAQ KGIDKKKLFF RLQSGDKVSI WKCLIMDDAE 180
  181 SVSFENDRGV SVDCCGSLVE NEVTERLRNL IRENKDDRQM RVVLLASGGH FAGTVFNGKS 240
  241 VVAHKTFHRY VVRAKAGKKQ STKDASGRSI HSAGASLRRY NELALKKDIQ ELLASWKPYF 300
  301 DGAACVFVHA PSSSRQLLFN GGKPYFSSQN CAVRNVPFTI RRPTFKESQR IYNQLTQIAH 360
  361 VTEEIFVNRP EVTKANTVVQ THNEDSGKTS RKEEPDETSS SNIILEEPNR IEEDIEDGVT 420
  421 GTSTALHEAA KSGDCERVME FLEEGMDPCA KDERGRTPYM LANEKEVRNT FRRFMALNLE 480
  481 KWNWHDAKVP SPLTKEMEES QAAKQAEKDA KQKARTKELK KLRKAREKKA QAEAAQAEKE 540
  541 KPISKVEEVR RAMAAQREKR AAAAERRMAS LNIQSSSSTS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..164] FFAS03 3.34 Solution Structure of the N-terminal Zinc Fingers of the Xenopus laevis double stranded RNA binding protein ZFa
    2 View Details [165..580] PSI-BLAST 43.39794 Ankyrin-R

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleic acid binding
    		•  2.85972242708612 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.77701617604772 bayes_pls_golite062009
  • DNA binding
    		•  2.71411659179983 bayes_pls_golite062009
  • binding
    		•  1.97525193898847 bayes_pls_golite062009
  • transcription factor activity
    		•  1.90143001800384 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.06438483834477 bayes_pls_golite062009
  • transcription activator activity
    		•  0.888241744617002 bayes_pls_golite062009
  • protein binding
    		•  0.721263040163177 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.375362589875489 bayes_pls_golite062009
  • catalytic activity
    		•  0.263007611601737 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.226250920465406 bayes_pls_golite062009
  • transcription factor binding
    		•  0.191965432731838 bayes_pls_golite062009
  • chromatin binding
    		•  0.131327938577204 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  1.58699086730647 bayes_pls_golite062009
  • protein binding
    		•  1.41750957807465 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.668531056539717 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.403559033288365 bayes_pls_golite062009
  • DNA binding
    		•  0.186657583240225 bayes_pls_golite062009
  • ligase activity
    		•  0.0845684108313678 bayes_pls_golite062009
  • transcription factor binding
    		•  0.0182460237384001 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle