| Protein: | gi|29824279, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 580 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29824279, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
522.0 | [0..1] | [580..1] |
|
Region A: Residues: [1-164] |
1 11 21 31 41 51
| | | | | |
1 MATTGAAATT EIGNPEYKQP RSIFDLTADF FDSCRLSNPS ETQSAFGPPK TFDPEEAEED 60
61 KSSKDGVILD RWTCNTCKIE FLSLQDQRYH FKSDIHRLNI KLSVAGKAIL KEEDVDELTS 120
121 ESVQDYDVSS ISGSEDEAET RPPSFHFDAQ KGIDKKKLFF RLQS
|
| Detection Method: |  |
| Confidence: | 3.34 |
| Match: | 1zu1A |
| Description: | Solution Structure of the N-terminal Zinc Fingers of the Xenopus laevis double stranded RNA binding protein ZFa |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 2.85972242708612 | bayes_pls_golite062009 |
| transcription regulator activity | 2.77701617604772 | bayes_pls_golite062009 |
| DNA binding | 2.71411659179983 | bayes_pls_golite062009 |
| binding | 1.97525193898847 | bayes_pls_golite062009 |
| transcription factor activity | 1.90143001800384 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.06438483834477 | bayes_pls_golite062009 |
| transcription activator activity | 0.888241744617002 | bayes_pls_golite062009 |
| protein binding | 0.721263040163177 | bayes_pls_golite062009 |
| transcription repressor activity | 0.375362589875489 | bayes_pls_golite062009 |
| catalytic activity | 0.263007611601737 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.226250920465406 | bayes_pls_golite062009 |
| transcription factor binding | 0.191965432731838 | bayes_pls_golite062009 |
| chromatin binding | 0.131327938577204 | bayes_pls_golite062009 |
|
Region A: Residues: [165-580] |
1 11 21 31 41 51
| | | | | |
1 GDKVSIWKCL IMDDAESVSF ENDRGVSVDC CGSLVENEVT ERLRNLIREN KDDRQMRVVL 60
61 LASGGHFAGT VFNGKSVVAH KTFHRYVVRA KAGKKQSTKD ASGRSIHSAG ASLRRYNELA 120
121 LKKDIQELLA SWKPYFDGAA CVFVHAPSSS RQLLFNGGKP YFSSQNCAVR NVPFTIRRPT 180
181 FKESQRIYNQ LTQIAHVTEE IFVNRPEVTK ANTVVQTHNE DSGKTSRKEE PDETSSSNII 240
241 LEEPNRIEED IEDGVTGTST ALHEAAKSGD CERVMEFLEE GMDPCAKDER GRTPYMLANE 300
301 KEVRNTFRRF MALNLEKWNW HDAKVPSPLT KEMEESQAAK QAEKDAKQKA RTKELKKLRK 360
361 AREKKAQAEA AQAEKEKPIS KVEEVRRAMA AQREKRAAAA ERRMASLNIQ SSSSTS
|
| Detection Method: | |
| Confidence: | 43.39794 |
| Match: | 1n11A |
| Description: | Ankyrin-R |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.58699086730647 | bayes_pls_golite062009 |
| protein binding | 1.41750957807465 | bayes_pls_golite062009 |
| transcription regulator activity | 0.668531056539717 | bayes_pls_golite062009 |
| nucleic acid binding | 0.403559033288365 | bayes_pls_golite062009 |
| DNA binding | 0.186657583240225 | bayes_pls_golite062009 |
| ligase activity | 0.0845684108313678 | bayes_pls_golite062009 |
| transcription factor binding | 0.0182460237384001 | bayes_pls_golite062009 |
