| Protein: | UGA3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 528 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UGA3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..528] | [1..528] |
|
|
0.0 | [9..526] | [13..522] |
|
|
1.0E-51 | [2..268] | [76..315] |
|
|
6.0E-35 | [2..182] | [37..214] |
|
|
7.0E-34 | [2..182] | [37..213] |
|
|
3.0E-30 | [2..182] | [38..214] |
|
|
2.0E-28 | [9..179] | [4..209] |
|
Region A: Residues: [1-58] |
1 11 21 31 41 51
| | | | | |
1 MNYGVEKLKL KYSKHGCITC KIRKKRCSED KPVCRDCRRL SFPCIYISES VDKQSLKK
|
| Detection Method: |  |
| Confidence: | 32.201249 |
| Match: | 1pyiA_ |
| Description: | PPR1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.56444258780502 | bayes_pls_golite062009 |
| DNA binding | 4.26146437716972 | bayes_pls_golite062009 |
| nucleic acid binding | 4.17369933547911 | bayes_pls_golite062009 |
| transcription factor activity | 3.049435548132 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.98081393153291 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.93914501897006 | bayes_pls_golite062009 |
| binding | 2.91929847152301 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 2.44382866473054 | bayes_pls_golite062009 |
| transcription activator activity | 2.24483536326713 | bayes_pls_golite062009 |
|
Region A: Residues: [59-452] |
1 11 21 31 41 51
| | | | | |
1 IKADIQHQLI SKKRKHAPDS AQKAAVATRT RRVGSDEQDN QVYLSKPLED CISQKLDSMG 60
61 LQLYNYYRSH LANIISIAPM NQNYYLNIFL PMAHENDGIL FAILAWSANH LSISSSNELR 120
121 KDEIFVNLAN KYTYMSLSHL KTNEGSSACA KLGFLYSLAQ ILILCGSEIC QGDVKFWKIL 180
181 LNIGKNLIEN HVGKDVSRIL TTTTEEPSLE ERIIFPNFNS VVKYWLIVNF IYHDILNFNT 240
241 TSFPIEQYEK FFQRDQNSLP SSANFIESID SPIEEIDPLI GINKPILLLL GQVTNLTRFL 300
301 QTMEQEEMLE HGDKILSLQV EIYKLQPSLM ALEHLDDEKK FYYLELFEIM KISTLMFFQL 360
361 TLLKIDKDSL ELQILRNKLD SKLDKVIGTF LEGS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [453-528] |
1 11 21 31 41 51
| | | | | |
1 LCFPLFIYGV CIQVEDMEKK IDLEAKFDDI LKRYKCYNFQ NARLLIRKIW QNEADGISEH 60
61 DLVHMIDELD YNINFA
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.888 | 0.193 | regulation of transcription from RNA polymerase II promoter | a.74.1 | Cyclin-like |
|
Region A: Residues: [395-528] |
1 11 21 31 41 51
| | | | | |
1 DEKKFYYLEL FEIMKISTLM FFQLTLLKID KDSLELQILR NKLDSKLDKV IGTFLEGSLC 60
61 FPLFIYGVCI QVEDMEKKID LEAKFDDILK RYKCYNFQNA RLLIRKIWQN EADGISEHDL 120
121 VHMIDELDYN INFA
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
