| Protein: | UGA3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 528 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UGA3.
| Description | E-value | Query Range |
Subject Range |
|
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0.0 | [1..528] | [1..528] |
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0.0 | [9..526] | [13..522] |
|
|
1.0E-51 | [2..268] | [76..315] |
|
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6.0E-35 | [2..182] | [37..214] |
|
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7.0E-34 | [2..182] | [37..213] |
|
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3.0E-30 | [2..182] | [38..214] |
|
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2.0E-28 | [9..179] | [4..209] |
|
Region A: Residues: [1-58] |
1 11 21 31 41 51
| | | | | |
1 MNYGVEKLKL KYSKHGCITC KIRKKRCSED KPVCRDCRRL SFPCIYISES VDKQSLKK
|
| Detection Method: |  |
| Confidence: | 32.201249 |
| Match: | 1pyiA_ |
| Description: | PPR1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.56444258780502 | bayes_pls_golite062009 |
| DNA binding | 4.26146437716972 | bayes_pls_golite062009 |
| nucleic acid binding | 4.17369933547911 | bayes_pls_golite062009 |
| transcription factor activity | 3.049435548132 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.98081393153291 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.93914501897006 | bayes_pls_golite062009 |
| binding | 2.91929847152301 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 2.44382866473054 | bayes_pls_golite062009 |
| transcription activator activity | 2.24483536326713 | bayes_pls_golite062009 |
|
Region A: Residues: [59-452] |
1 11 21 31 41 51
| | | | | |
1 IKADIQHQLI SKKRKHAPDS AQKAAVATRT RRVGSDEQDN QVYLSKPLED CISQKLDSMG 60
61 LQLYNYYRSH LANIISIAPM NQNYYLNIFL PMAHENDGIL FAILAWSANH LSISSSNELR 120
121 KDEIFVNLAN KYTYMSLSHL KTNEGSSACA KLGFLYSLAQ ILILCGSEIC QGDVKFWKIL 180
181 LNIGKNLIEN HVGKDVSRIL TTTTEEPSLE ERIIFPNFNS VVKYWLIVNF IYHDILNFNT 240
241 TSFPIEQYEK FFQRDQNSLP SSANFIESID SPIEEIDPLI GINKPILLLL GQVTNLTRFL 300
301 QTMEQEEMLE HGDKILSLQV EIYKLQPSLM ALEHLDDEKK FYYLELFEIM KISTLMFFQL 360
361 TLLKIDKDSL ELQILRNKLD SKLDKVIGTF LEGS
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [453-528] |
1 11 21 31 41 51
| | | | | |
1 LCFPLFIYGV CIQVEDMEKK IDLEAKFDDI LKRYKCYNFQ NARLLIRKIW QNEADGISEH 60
61 DLVHMIDELD YNINFA
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| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.888 | 0.193 | regulation of transcription from RNA polymerase II promoter | a.74.1 | Cyclin-like |
| View | Download | 0.730 | 0.029 | nitrogen utilization | a.64.1 | Saposin |
| View | Download | 0.666 | 0.026 | nitrogen utilization | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.622 | N/A | N/A | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.614 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.607 | N/A | N/A | a.64.1 | Saposin |
| View | Download | 0.558 | N/A | N/A | a.81.1 | N-terminal domain of DnaB helicase |
| View | Download | 0.504 | N/A | N/A | a.60.13 | Putative methyltransferase TM0872, insert domain |
| View | Download | 0.478 | N/A | N/A | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.468 | N/A | N/A | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.468 | N/A | N/A | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.463 | N/A | N/A | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.459 | N/A | N/A | a.4.13 | Sigma3 and sigma4 domains of RNA polymerase sigma factors |
| View | Download | 0.455 | N/A | N/A | a.60.13 | Putative methyltransferase TM0872, insert domain |
| View | Download | 0.451 | N/A | N/A | a.144.1 | PABC (PABP) domain |
| View | Download | 0.442 | N/A | N/A | a.23.4 | Mitochondrial import receptor subunit Tom20 |
| View | Download | 0.439 | N/A | N/A | a.57.1 | Protein HNS-dependent expression A; HdeA |
| View | Download | 0.435 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.426 | N/A | N/A | a.37.1 | A DNA-binding domain in eukaryotic transcription factors |
| View | Download | 0.419 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.418 | N/A | N/A | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.413 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.412 | N/A | N/A | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.407 | N/A | N/A | d.15.1 | Ubiquitin-like |
| View | Download | 0.405 | N/A | N/A | a.57.1 | Protein HNS-dependent expression A; HdeA |
| View | Download | 0.403 | N/A | N/A | a.3.1 | Cytochrome c |
| View | Download | 0.394 | N/A | N/A | a.126.1 | Serum albumin-like |
| View | Download | 0.391 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.391 | N/A | N/A | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.390 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.389 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.388 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.387 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.369 | N/A | N/A | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.367 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.366 | N/A | N/A | a.126.1 | Serum albumin-like |
| View | Download | 0.365 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.359 | N/A | N/A | g.39.1 | Glucocorticoid receptor-like (DNA-binding domain) |
| View | Download | 0.358 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.355 | N/A | N/A | a.144.1 | PABC (PABP) domain |
| View | Download | 0.349 | N/A | N/A | a.144.1 | PABC (PABP) domain |
| View | Download | 0.346 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.344 | N/A | N/A | a.144.1 | PABC (PABP) domain |
| View | Download | 0.341 | N/A | N/A | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.338 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.333 | N/A | N/A | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.333 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.332 | N/A | N/A | d.15.1 | Ubiquitin-like |
| View | Download | 0.331 | N/A | N/A | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.331 | N/A | N/A | a.28.2 | Colicin E immunity proteins |
| View | Download | 0.329 | N/A | N/A | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.326 | N/A | N/A | a.81.1 | N-terminal domain of DnaB helicase |
| View | Download | 0.325 | N/A | N/A | a.3.1 | Cytochrome c |
| View | Download | 0.324 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.321 | N/A | N/A | d.74.2 | C-terminal domain of arginine repressor |
| View | Download | 0.319 | N/A | N/A | a.51.1 | Cytochrome c oxidase subunit h |
| View | Download | 0.319 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.310 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.309 | N/A | N/A | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.306 | N/A | N/A | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.305 | N/A | N/A | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.305 | N/A | N/A | a.112.1 | Description not found. |
| View | Download | 0.298 | N/A | N/A | a.105.1 | FIS-like |
| View | Download | 0.296 | N/A | N/A | d.74.2 | C-terminal domain of arginine repressor |
| View | Download | 0.293 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.291 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.290 | N/A | N/A | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.287 | N/A | N/A | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.287 | N/A | N/A | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.287 | N/A | N/A | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.285 | N/A | N/A | a.144.1 | PABC (PABP) domain |
| View | Download | 0.285 | N/A | N/A | a.5.3 | N-terminal domain of phosphatidylinositol transfer protein sec14p |
| View | Download | 0.283 | N/A | N/A | a.23.4 | Mitochondrial import receptor subunit Tom20 |
| View | Download | 0.283 | N/A | N/A | a.5.3 | N-terminal domain of phosphatidylinositol transfer protein sec14p |
| View | Download | 0.281 | N/A | N/A | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.279 | N/A | N/A | a.5.3 | N-terminal domain of phosphatidylinositol transfer protein sec14p |
| View | Download | 0.278 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.277 | N/A | N/A | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.276 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.275 | N/A | N/A | a.60.13 | Putative methyltransferase TM0872, insert domain |
| View | Download | 0.267 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.267 | N/A | N/A | a.126.1 | Serum albumin-like |
| View | Download | 0.262 | N/A | N/A | a.81.1 | N-terminal domain of DnaB helicase |
| View | Download | 0.262 | N/A | N/A | a.81.1 | N-terminal domain of DnaB helicase |
| View | Download | 0.259 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.255 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.255 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.254 | N/A | N/A | a.4.13 | Sigma3 and sigma4 domains of RNA polymerase sigma factors |
| View | Download | 0.253 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.252 | N/A | N/A | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.247 | N/A | N/A | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.241 | N/A | N/A | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.238 | N/A | N/A | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
| View | Download | 0.234 | N/A | N/A | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.232 | N/A | N/A | a.5.3 | N-terminal domain of phosphatidylinositol transfer protein sec14p |
| View | Download | 0.231 | N/A | N/A | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.230 | N/A | N/A | d.230.3 | Amyloid beta a4 protein copper binding domain (domain 2) |
| View | Download | 0.225 | N/A | N/A | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.225 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.224 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.222 | N/A | N/A | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.222 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.217 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.213 | N/A | N/A | a.2.7 | tRNA-binding arm |
| View | Download | 0.211 | N/A | N/A | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.210 | N/A | N/A | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.206 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.203 | N/A | N/A | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.202 | N/A | N/A | a.43.1 | Met repressor-like |
| View | Download | 0.200 | N/A | N/A | a.4.3 | ARID-like |
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Region A: Residues: [395-528] |
1 11 21 31 41 51
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1 DEKKFYYLEL FEIMKISTLM FFQLTLLKID KDSLELQILR NKLDSKLDKV IGTFLEGSLC 60
61 FPLFIYGVCI QVEDMEKKID LEAKFDDILK RYKCYNFQNA RLLIRKIWQN EADGISEHDL 120
121 VHMIDELDYN INFA
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| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
