| Protein: | CDC9 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 755 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDC9.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..755] | [1..755] |
|
|
0.0 | [18..750] | [21..751] |
|
|
0.0 | [24..753] | [48..779] |
|
|
0.0 | [9..755] | [305..1058] |
|
|
0.0 | [10..755] | [149..905] |
|
|
0.0 | [9..749] | [146..897] |
|
|
0.0 | [5..749] | [150..899] |
|
|
0.0 | [8..751] | [70..796] |
|
Region A: Residues: [1-143] |
1 11 21 31 41 51
| | | | | |
1 MRRLLTGCLL SSARPLKSRL PLLMSSSLPS SAGKKPKQAT LARFFTSMKN KPTEGTPSPK 60
61 KSSKHMLEDR MDNVSGEEEY ATKKLKQTAV THTVAAPSSM GSNFSSIPSS APSSGVADSP 120
121 QQSQRLVGEV EDALSSNNND HYS
|
| Detection Method: |  |
| Confidence: | 7.99 |
| Match: | 1ldvA |
| Description: | No description for 1ldvA was found. |
|
Region A: Residues: [144-330] |
1 11 21 31 41 51
| | | | | |
1 SNIPYSEVCE VFNKIEAISS RLEIIRICSD FFIKIMKQSS KNLIPTTYLF INRLGPDYEA 60
61 GLELGLGENL LMKTISETCG KSMSQIKLKY KDIGDLGEIA MGARNVQPTM FKPKPLTVGE 120
121 VFKNLRAIAK TQGKDSQLKK MKLIKRMLTA CKGIEAKFLI RSLESKLRIG LAEKTVLISL 180
181 SKALLLH
|
| Detection Method: | |
| Confidence: | 7.17 |
| Match: | 1lshA |
| Description: | Lipovitellin-phosvitin complex, superhelical domain; Lipovitellin-phosvitin complex; beta-sheet shell regions |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA ligase activity | 5.12640522664474 | bayes_pls_golite062009 |
| ligase activity, forming phosphoric ester bonds | 5.0464977640909 | bayes_pls_golite062009 |
| DNA ligase (ATP) activity | 3.18914513915107 | bayes_pls_golite062009 |
| DNA ligase (NAD+) activity | 3.1488483282989 | bayes_pls_golite062009 |
| ligase activity | 2.36807839237461 | bayes_pls_golite062009 |
| catalytic activity | 2.15370807854636 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 2.06695360101593 | bayes_pls_golite062009 |
| nucleic acid binding | 1.4725380374617 | bayes_pls_golite062009 |
| binding | 1.23714137231717 | bayes_pls_golite062009 |
| DNA binding | 1.1855473374207 | bayes_pls_golite062009 |
| protein binding | 0.0772495917382868 | bayes_pls_golite062009 |
|
Region A: Residues: [331-391] |
1 11 21 31 41 51
| | | | | |
1 DENREDSPDK DVPMDVLESA QQKIRDAFCQ VPNYEIVINS CLEHGIMNLD KYCTLRPGIP 60
61 L
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.502 | a.4.1 | Homeodomain-like |
| View | Download | 0.592 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.655 | a.4.11 | RNA polymerase subunit RPB10 |
| View | Download | 0.730 | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.447 | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.387 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.353 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.353 | a.112.1 | Description not found. |
| View | Download | 0.333 | a.4.1 | Homeodomain-like |
| View | Download | 0.321 | a.108.1 | Ribosomal protein L7/12, oligomerisation (N-terminal) domain |
| View | Download | 0.319 | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.299 | a.4.1 | Homeodomain-like |
| View | Download | 0.296 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.295 | a.159.2 | FF domain |
| View | Download | 0.294 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.288 | a.126.1 | Serum albumin-like |
| View | Download | 0.259 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.240 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.239 | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.236 | d.120.1 | Cytochrome b5 |
| View | Download | 0.231 | a.4.1 | Homeodomain-like |
| View | Download | 0.220 | d.15.2 | CAD & PB1 domains |
| View | Download | 0.217 | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.207 | a.4.1 | Homeodomain-like |
| View | Download | 0.205 | a.64.2 | Bacteriocin AS-48 |
|
Region A: Residues: [392-419] |
1 11 21 31 41 51
| | | | | |
1 KPMLAKPTKA INEVLDRFQG ETFTSEYK
|
|
Region B: Residues: [548-599] |
1 11 21 31 41 51
| | | | | |
1 TQITTNNLDE LQKFLDESVN HSCEGLMVKM LEGPESHYEP SKRSRNWLKL KK
|
| Detection Method: | |
| Confidence: | 38.30103 |
| Match: | 1a0i__ |
| Description: | ATP-dependent DNA ligase; ATP-dependent DNA ligase, N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [420-547] |
1 11 21 31 41 51
| | | | | |
1 YDGERAQVHL LNDGTMRIYS RNGENMTERY PEINITDFIQ DLDTTKNLIL DCEAVAWDKD 60
61 QGKILPFQVL STRKRKDVEL NDVKVKVCLF AFDILCYNDE RLINKSLKER REYLTKVTKV 120
121 VPGEFQYA
|
|
Region B: Residues: [600-755] |
1 11 21 31 41 51
| | | | | |
1 DYLEGVGDSL DLCVLGAYYG RGKRTGTYGG FLLGCYNQDT GEFETCCKIG TGFSDEMLQL 60
61 LHDRLTPTII DGPKATFVFD SSAEPDVWFE PTTLFEVLTA DLSLSPIYKA GSATFDKGVS 120
121 LRFPRFLRIR EDKGVEDATS SDQIVELYEN QSHMQN
|
| Detection Method: | |
| Confidence: | 38.30103 |
| Match: | 1a0i__ |
| Description: | ATP-dependent DNA ligase; ATP-dependent DNA ligase, N-terminal domain |
| Matching Structure (courtesy of the PDB): |
|
