YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|16905197, gi|...

General Information:
Name(s) found: gi|40539108 [NCBI NR]
gi|37535574 [NCBI NR]
gi|31432783 [NCBI NR]
gi|16905197 [NCBI NR]
gi|125575216 [NCBI NR]
Description(s) found:
Found 9 descriptions.
SHOW ALL
  • gi|40539108|gb|AAR87364.1| putative DNA ligase [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|37535574|ref|NP_922089.1| putative DNA ligase [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|31432783|gb|AAP54376.1| DNA ligase, putative, expressed [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|16905197|gb|AAL31067.1|AC090120_13 putative DNA ligase [Oryza sativa] [NCBI NR]
  • gi|125575216|gb|EAZ16500.1| hypothetical protein OsJ_030709 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 810 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASAGGGGG GGGKRTVADV LMGNARDAAR KAKKGAAPSP KKLKTQPQPA AEADGGAVAK  60
   61 PEEKPHSPVK PKRSSSPTKS NSPGEGKRSE SVAAGAKPEA KEKPSPKKPK TLGAKSDTKS 120
  121 SAEGVEKEKR RSPSPTKAKA LASESQDIKK PSSPKKTKAL DAPKSEEKDT TLELKKKGSE 180
  181 FNPMAAAYWS PEEPVPFLFL ARALDLISNE SGRIVITEIL SNVFRTVIAT TPEDLLATVY 240
  241 LSANRIAPPH EGTELGIGDA SIIRALAEAY GRREEHVKKN LKELGDLGLV AKASRLSQKM 300
  301 MYKPKPLTIS HVLAKFRTIA KESGKDSQDK KRNHIKGLLV AATDCEPQYI TRLLQSKMRI 360
  361 GLAEKTVQMA LGQAAVYSEK HSPPSKIQSP FEEAAKIIKQ VYSVLPIYDK IVPAILEVGV 420
  421 WKLPEICSFS IGVPVGPMLA KATKSVSEII DKFQGLEYTC EYKYDGERAQ IHCLEDGSVE 480
  481 IYSRNAERNT GKYPDVVDAV SRFRKPTVKS FVLDCEIVAY DREKKKILPF QILSTRARKG 540
  541 VTISDIKVSV CTFGFDILYI NGKPLLQEQL KVRREHLYNS FEEVPGVFQL ATSITSNDLE 600
  601 EIQKFLDTAV NSSCEGLIIK TLDKDATYEP AKRSNNWLKL KKDYMDSIGD SLDLVPIAAF 660
  661 HGRGKRTGVY GSFLLACYDE QNEEYQTICN IGTGFSEQQL EERSVSLRTK AIPKPKAYYR 720
  721 FADTMDPDVW FEPSEVWEVK AADLSISPVH RAANGIVDPN KGISLRFPRL LRVRDDKNPE 780
  781 QATTSEQVAD MYRAQKIYHA NNNNDDEDDD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..151] PSI-BLAST 8.39794 Solution structure of the zinc-finger domain from DNA ligase IIIa
    2 View Details [152..810] PSI-BLAST 168.0 Crystal Structure of Human DNA Ligase I bound to 5'-adenylated, nicked DNA


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle