YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16905197, gi\|...
Organism:	Oryza sativa Japonica Group
Length:	810 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16905197, gi|....

Description	E-value	Query Range	Subject Range
gi\|110755140 - gi\|110755140\|ref\|XP_392286.3\| PREDICTED: similar to CG5602-PA [Apis mellifera]	638.0	[0..2]	[810..38]
gi\|55235559, gi\|... - gi\|58393333\|ref\|XP_319999.2\| ENSANGP00000010547 [Anopheles gambiae str. PEST], gi\|55235559\|gb\|EAA150...	612.0	[0..165]	[809..1]
gi\|91079524 - gi\|91079524\|ref\|XP_966413.1\| PREDICTED: similar to CG5602-PA isoform 1 [Tribolium castaneum]	609.0	[0..103]	[810..33]
gi\|54635399, gi\|... - gi\|54635399\|gb\|EAL24802.1\| GA18999-PA [Drosophila pseudoobscura], gi\|125807011\|ref\|XP_001360228.1\| G...	609.0	[0..77]	[809..4]
gi\|68356762 - gi\|68356762\|ref\|XP_685406.1\| PREDICTED: similar to ligase I [Danio rerio]	607.0	[0..187]	[809..1]
CG5602-PA - This gene is referred to in FlyBase by the symbol Dmel\CG5602 (CG5602, FBgn0034922). It is a protein...	605.0	[0..82]	[809..10]
DNLI1_ARATH - DNA ligase 1 OS=Arabidopsis thaliana GN=LIG1 PE=2 SV=2	602.0	[0..84]	[809..64]
DNLI1_SCHPO - DNA ligase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cdc17 PE=3 SV=1 cdc17 - ATP-dependent DNA ligase Cdc17	596.0	[0..78]	[810..32]
gi\|74183394 - gi\|74183394\|dbj\|BAE36577.1\| unnamed protein product [Mus musculus]	595.0	[0..128]	[809..1]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASAGGGGG GGGKRTVADV LMGNARDAAR KAKKGAAPSP KKLKTQPQPA AEADGGAVAK  60
   61 PEEKPHSPVK PKRSSSPTKS NSPGEGKRSE SVAAGAKPEA KEKPSPKKPK TLGAKSDTKS 120
  121 SAEGVEKEKR RSPSPTKAKA LASESQDIKK P

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.39794
Match:	1uw0A
Description:	Solution structure of the zinc-finger domain from DNA ligase IIIa
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [152-810]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSPKKTKALD APKSEEKDTT LELKKKGSEF NPMAAAYWSP EEPVPFLFLA RALDLISNES  60
   61 GRIVITEILS NVFRTVIATT PEDLLATVYL SANRIAPPHE GTELGIGDAS IIRALAEAYG 120
  121 RREEHVKKNL KELGDLGLVA KASRLSQKMM YKPKPLTISH VLAKFRTIAK ESGKDSQDKK 180
  181 RNHIKGLLVA ATDCEPQYIT RLLQSKMRIG LAEKTVQMAL GQAAVYSEKH SPPSKIQSPF 240
  241 EEAAKIIKQV YSVLPIYDKI VPAILEVGVW KLPEICSFSI GVPVGPMLAK ATKSVSEIID 300
  301 KFQGLEYTCE YKYDGERAQI HCLEDGSVEI YSRNAERNTG KYPDVVDAVS RFRKPTVKSF 360
  361 VLDCEIVAYD REKKKILPFQ ILSTRARKGV TISDIKVSVC TFGFDILYIN GKPLLQEQLK 420
  421 VRREHLYNSF EEVPGVFQLA TSITSNDLEE IQKFLDTAVN SSCEGLIIKT LDKDATYEPA 480
  481 KRSNNWLKLK KDYMDSIGDS LDLVPIAAFH GRGKRTGVYG SFLLACYDEQ NEEYQTICNI 540
  541 GTGFSEQQLE ERSVSLRTKA IPKPKAYYRF ADTMDPDVWF EPSEVWEVKA ADLSISPVHR 600
  601 AANGIVDPNK GISLRFPRLL RVRDDKNPEQ ATTSEQVADM YRAQKIYHAN NNNDDEDDD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	168.0
Match:	1x9nA
Description:	Crystal Structure of Human DNA Ligase I bound to 5'-adenylated, nicked DNA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits