| Protein: | PRP9 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 530 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRP9.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..530] | [1..530] |
|
|
0.0 | [2..530] | [3..501] |
|
|
0.0 | [2..530] | [3..501] |
|
|
0.0 | [2..530] | [3..501] |
|
|
0.0 | [2..530] | [3..503] |
|
|
0.0 | [2..530] | [4..492] |
|
|
1.0E-67 | [157..530] | [76..370] |
|
Region A: Residues: [1-212] |
1 11 21 31 41 51
| | | | | |
1 MNLLETRRSL LEEMEIIENA IAERIQRNPE LYYHYIQESS KVFPDTKLPR SSLIAENKIY 60
61 KFKKVKRKRK QIILQQHEIN IFLRDYQEKQ QTFNKINRPE ETQEDDKDLP NFERKLQQLE 120
121 KELKNEDENF ELDINSKKDK YALFSSSSDP SRRTNILSDR ARDLDLNEIF TRDEQYGEYM 180
181 ELEQFHSLWL NVIKRGDCSL LQFLDILELF LD
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [213-530] |
1 11 21 31 41 51
| | | | | |
1 DEKYLLTPPM DRKNDRYMAF LLKLSKYVET FFFKSYALLD AAAVENLIKS DFEHSYCRGS 60
61 LRSEAKGIYC PFCSRWFKTS SVFESHLVGK IHKKNESKRR NFVYSEYKLH RYLKYLNDEF 120
121 SRTRSFVERK LAFTANERMA EMDILTQKYE APAYDSTEKE GAEQVDGEQR DGQLQEEHLS 180
181 GKSFDMPLGP DGLPMPYWLY KLHGLDREYR CEICSNKVYN GRRTFERHFN EERHIYHLRC 240
241 LGIEPSSVFK GITKIKEAQE LWKNMQGQSQ LTSIAAVPPK PNPSQLKVPT ELELEEEDEE 300
301 GNVMSKKVYD ELKKQGLV
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| transcription regulator activity | 3.37529385176635 | bayes_pls_golite062009 |
| DNA binding | 3.3049326844117 | bayes_pls_golite062009 |
| nucleic acid binding | 3.24981360535232 | bayes_pls_golite062009 |
| snRNA binding | 3.16782731106334 | bayes_pls_golite062009 |
| RNA binding | 3.11293528368816 | bayes_pls_golite062009 |
| U1 snRNA binding | 2.86343975521155 | bayes_pls_golite062009 |
| transcription factor activity | 2.44389510173662 | bayes_pls_golite062009 |
| binding | 2.40458515823407 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.57041104288348 | bayes_pls_golite062009 |
| mRNA binding | 1.28525296322454 | bayes_pls_golite062009 |
| transcription activator activity | 1.20323819132961 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.732558534458316 | bayes_pls_golite062009 |
| protein binding | 0.702841772031834 | bayes_pls_golite062009 |
| transcription repressor activity | 0.686318575498149 | bayes_pls_golite062009 |
| chromatin binding | 0.626365497850853 | bayes_pls_golite062009 |
| transcription factor binding | 0.515821187939278 | bayes_pls_golite062009 |
| catalytic activity | 0.263007611601737 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.200483461579207 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.113925660147477 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.0855506955761403 | bayes_pls_golite062009 |
