| Protein: | APC11 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 165 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APC11.
| Description | E-value | Query Range |
Subject Range |
|
|
1.0E-37 | [1..165] | [1..165] |
|
|
4.0E-20 | [21..159] | [335..465] |
|
|
3.0E-18 | [20..154] | [92..227] |
|
|
5.0E-17 | [1..102] | [1..84] |
|
Region A: Residues: [1-165] |
1 11 21 31 41 51
| | | | | |
1 MKVKINEVHS VFAWSWHIPS TSDEDAANND PIGNDEDEDV CGICRASYNG TCPSCKFPGD 60
61 QCPLVIGLCH HNFHDHCIYR WLDTPTSKGL CPMCRQTFQL QKGLAINDAH VQKFVEIVSR 120
121 RREEMIEEGV AEEFVDFDEP IRQNTDNPIG RQQVDTILDE DFLLR
|
| Detection Method: |  |
| Confidence: | 71.68867 |
| Match: | 1ldjB_ |
| Description: | RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| ubiquitin-protein ligase activity | 10.2497392096259 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 10.0460587929138 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 8.99384576623969 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 7.6988425139962 | bayes_pls_golite062009 |
| ligase activity | 3.92677358871643 | bayes_pls_golite062009 |
| binding | 2.58862749918018 | bayes_pls_golite062009 |
| NEDD8 ligase activity | 2.41658628840288 | bayes_pls_golite062009 |
| protein binding | 1.49775478023418 | bayes_pls_golite062009 |
| small conjugating protein-specific protease activity | 1.2126425713931 | bayes_pls_golite062009 |
| ubiquitin-specific protease activity | 1.03469202541773 | bayes_pls_golite062009 |
| nucleic acid binding | 0.708499177773075 | bayes_pls_golite062009 |
| transcription regulator activity | 0.681643203460463 | bayes_pls_golite062009 |
| hydrolase activity | 0.52386813728704 | bayes_pls_golite062009 |
| cysteine-type peptidase activity | 0.50197530717959 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.392372133643049 | bayes_pls_golite062009 |
| ubiquitin thiolesterase activity | 0.265769062717221 | bayes_pls_golite062009 |
| DNA binding | 0.227671243150662 | bayes_pls_golite062009 |
| catalytic activity | 0.14112008370434 | bayes_pls_golite062009 |
| enzyme binding | 0.104373352314595 | bayes_pls_golite062009 |
