| Protein: | SRD1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 221 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRD1.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-53 | [1..221] | [1..221] |
|
|
2.0E-39 | [47..220] | [179..343] |
|
|
7.0E-39 | [5..218] | [166..367] |
|
|
2.0E-38 | [5..218] | [166..366] |
|
|
1.0E-37 | [5..218] | [166..367] |
|
Region A: Residues: [1-139] |
1 11 21 31 41 51
| | | | | |
1 MRYNNYDNSG SSFLTRVVKK SDMEKTLLLN REIDDWKSND KKKAYKERGR VYASCSFIEV 60
61 SFSQIRAVDV EKKIENAEQL RDLTRNIVKN KTSSLNEITP SKNRVTSACN SERRTTSQEA 120
121 NNLEGYHSCA QGTSRSASI
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [140-221] |
1 11 21 31 41 51
| | | | | |
1 TKKYSKKTTS RPKREKRQTI LPNGEIKECS KCKDTWTIQW RSGPDQNREL CSPCGLAYGK 60
61 RLKKENEKKR QAADKRIDRN NP
|
| Detection Method: | |
| Confidence: | 17.045757 |
| Match: | 4gatA_ |
| Description: | Erythroid transcription factor GATA-1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 2.90545037627165 | bayes_pls_golite062009 |
| DNA binding | 2.60187443597685 | bayes_pls_golite062009 |
| binding | 2.3712591616364 | bayes_pls_golite062009 |
| nucleic acid binding | 2.37049966873591 | bayes_pls_golite062009 |
| transcription factor activity | 2.06400766265838 | bayes_pls_golite062009 |
| protein binding | 1.16334132659733 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.09234758156492 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.01709689122918 | bayes_pls_golite062009 |
| transcription activator activity | 0.84971806234869 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 0.66439028392158 | bayes_pls_golite062009 |
| transcription factor binding | 0.66367552914256 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.10642958544072 | bayes_pls_golite062009 |
| catalytic activity | 0.101795606736461 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.06728167026678 | bayes_pls_golite062009 |
