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Protein Overview: SRD1_YEAST

General Information:
Name(s) found: SRD1_YEAST [Swiss-Prot]
Description(s) found:
  • Pre-rRNA-processing protein SRD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SRD1 PE=1 SV=2 [Swiss-Prot]
    • Organism: Saccharomyces cerevisiae S288c
    Length: 221 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRYNNYDNSG SSFLTRVVKK SDMEKTLLLN REIDDWKSND KKKAYKERGR VYASCSFIEV  60
   61 SFSQIRAVDV EKKIENAEQL RDLTRNIVKN KTSSLNEITP SKNRVTSACN SERRTTSQEA 120
  121 NNLEGYHSCA QGTSRSASIT KKYSKKTTSR PKREKRQTIL PNGEIKECSK CKDTWTIQWR 180
  181 SGPDQNRELC SPCGLAYGKR LKKENEKKRQ AADKRIDRNN P

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..139] deduced N/A No confident structure predictions are available.
    2 View Details [140..221] PSI-BLAST 17.045757 Erythroid transcription factor GATA-1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • transcription regulator activity
    		•  2.90545037627165 bayes_pls_golite062009
  • DNA binding
    		•  2.60187443597685 bayes_pls_golite062009
  • binding
    		•  2.3712591616364 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.37049966873591 bayes_pls_golite062009
  • transcription factor activity
    		•  2.06400766265838 bayes_pls_golite062009
  • protein binding
    		•  1.16334132659733 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.09234758156492 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.01709689122918 bayes_pls_golite062009
  • transcription activator activity
    		•  0.84971806234869 bayes_pls_golite062009
  • ligand-dependent nuclear receptor activity
    		•  0.66439028392158 bayes_pls_golite062009
  • transcription factor binding
    		•  0.66367552914256 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  0.10642958544072 bayes_pls_golite062009
  • catalytic activity
    		•  0.101795606736461 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.06728167026678 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle