| Protein: | APE3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 563 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APE3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [27..563] | [1..537] |
|
|
2.0E-79 | [47..562] | [16..519] |
|
|
5.0E-74 | [18..554] | [55..624] |
|
|
2.0E-73 | [60..563] | [4..510] |
|
|
2.0E-72 | [64..563] | [50..550] |
|
|
6.0E-70 | [18..555] | [58..631] |
|
|
3.0E-69 | [18..555] | [58..632] |
|
|
4.0E-69 | [19..555] | [56..622] |
|
|
7.0E-69 | [18..555] | [55..619] |
|
Region A: Residues: [1-195] |
1 11 21 31 41 51
| | | | | |
1 MGTKPCSAFQ QLVEEAKKKK KTETPTMHFS LKQLAVAAFY ATNLGSAYVI PQFFQEAFQQ 60
61 EEPIENYLPQ LNDDDSSAVA ANIPKPHIPY FMKPHVESEK LQDKIKVDDL NATAWDLYRL 120
121 ANYSTPDYGH PTRVIGSKGH NKTMEYILNV FDDMQDYYDV SLQEFEALSG KIISFNLSDA 180
181 ETGKSFANTT AFALS
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [196-319] |
1 11 21 31 41 51
| | | | | |
1 PPVDGFVGKL VEIPNLGCEE KDYASVVPPR HNEKQIALIE RGKCPFGDKS NLAGKFGFTA 60
61 VVIYDNEPKS KEGLHGTLGE PTKHTVATVG VPYKVGKKLI ANIALNIDYS LYFAMDSYVE 120
121 FIKT
|
| Detection Method: | |
| Confidence: | 16.040959 |
| Match: | PF02225.8 |
| Description: | No description for PF02225.8 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [320-563] |
1 11 21 31 41 51
| | | | | |
1 QNIIADTKHG DPDNIVALGA HSDSVEEGPG INDDGSGTIS LLNVAKQLTH FKINNKVRFA 60
61 WWAAEEEGLL GSNFYAYNLT KEENSKIRVF MDYDMMASPN YEYEIYDANN KENPKGSEEL 120
121 KNLYVDYYKA HHLNYTLVPF DGRSDYVGFI NNGIPAGGIA TGAEKNNVNN GKVLDRCYHQ 180
181 LCDDVSNLSW DAFITNTKLI AHSVATYADS FEGFPKRETQ KHKEVDILNA QQPQFKYRAD 240
241 FLII
|
| Detection Method: | |
| Confidence: | 31.30103 |
| Match: | 1cp7A_ |
| Description: | Aminopeptidase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| peptidase activity | 4.69852272549237 | bayes_pls_golite062009 |
| hydrolase activity | 4.23257784904124 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 4.21193944512431 | bayes_pls_golite062009 |
| exopeptidase activity | 1.5759162922092 | bayes_pls_golite062009 |
| catalytic activity | 1.3989281287879 | bayes_pls_golite062009 |
| metallopeptidase activity | 1.13008914743741 | bayes_pls_golite062009 |
| carboxypeptidase activity | 0.891655769761122 | bayes_pls_golite062009 |
| metalloexopeptidase activity | 0.472688733072762 | bayes_pls_golite062009 |
| endopeptidase activity | 0.444575216242393 | bayes_pls_golite062009 |
| binding | 0.306621556591446 | bayes_pls_golite062009 |
| metallocarboxypeptidase activity | 0.180859448845431 | bayes_pls_golite062009 |
| aminopeptidase activity | 0.0966237570696103 | bayes_pls_golite062009 |
