YRC Public Data Repository - Protein Structure Prediction

Protein:	SPEB2_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	413 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPEB2_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|46110649, gi\|... - gi\|46110649\|ref\|XP_382382.1\| hypothetical protein FG02206.1 [Gibberella zeae PH-1], gi\|42545337\|gb\|E...	406.0	[0..23]	[412..12]
gi\|83772901 - gi\|83772901\|dbj\|BAE63029.1\| unnamed protein product [Aspergillus oryzae] gi\|238500027, gi... - gi\|238500027\|ref\|XP_002381248.1\| agmatinase, putative [Aspergillus flavus NRRL3357], gi\|220693001\|gb... gi\|169779395 - gi\|169779395\|ref\|XP_001824162.1\| hypothetical protein [Aspergillus oryzae RIB40]	400.0	[0..12]	[407..1]
gi\|145010167, gi... - gi\|39969847\|ref\|XP_366314.1\| hypothetical protein MGG_10533 [Magnaporthe grisea 70-15], gb\|EAA46839....	400.0	[0..29]	[407..18]
gi\|159126939 - gi\|159126939\|gb\|EDP52055.1\| agmatinase, putative [Aspergillus fumigatus A1163] gi\|66850972, gi\|... - gi\|70997163\|ref\|XP_753336.1\| agmatinase [Aspergillus fumigatus Af293], gi\|66850972\|gb\|EAL91298.1\| ag...	400.0	[0..12]	[407..1]
gi\|115399562, gi... - gi\|115399562\|ref\|XP_001215370.1\| hypothetical protein ATEG_06192 [Aspergillus terreus NIH2624], gi\|1...	395.0	[0..12]	[407..1]
gi\|85102976 - gi\|85102976\|ref\|XP_961434.1\| hypothetical protein NCU01348 [Neurospora crassa OR74A] gi\|16944651, gi\|... - gi\|32412722\|ref\|XP_326841.1\| hypothetical protein [Neurospora crassa], gi\|28922979\|gb\|EAA32198.1\| hy...	388.0	[0..29]	[407..18]
gi\|49101877, gi\|... - gi\|67541398\|ref\|XP_664473.1\| hypothetical protein AN6869.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	381.0	[0..30]	[407..19]
SPEB1_SCHPO - Putative agmatinase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11D3.09 PE=3 SV=... SPAC11D3.09 - agmatinase	381.0	[0..32]	[410..22]
gi\|169624790, gi... - gi\|169624790\|ref\|XP_001805800.1\| hypothetical protein SNOG_15656 [Phaeosphaeria nodorum SN15], gi\|11...	380.0	[0..20]	[404..8]

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Predicted Domain #1

Region A:
Residues: [1-413]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTYQKIIQL ALLLSGVCGA LASIDTDSHL SPKVLEKLRP TENLAYEDDS LDDDTWRSKR  60
   61 WEFDYQYSGI STFAHLPHVR CLVEQSEDFD IAIIGVPFDT AVSHRPGARF GPKGIRSASS 120
  121 RQMAIRGFNP SLNVNPYESW AKILDCGDIP VSSYDNQLAV RQMTEGYIDL LSRKATASPA 180
  181 SNNLKTAGLA KDGIFHPRLI TLGGDHSIGL ASLRALGHFY GNVSVIHFDS HLDTWNPKRY 240
  241 YPSYWHSDRA DFTHGTMFWM ASKEGLINNG TSIHAGLRTR LSGTDYYDYE EDNRVGFTFI 300
  301 EAQEIDEIGV NGIVERIKQV VGDTLVYLSI DIDVVDPGLA PGTGTPETGG WTTREMKSIL 360
  361 RKLDGHLNLV GAEVVEVSPP YDDRAESTSL AASDFIFEIL SSMVKHPLYD VKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	77.0
Match:	1gq6A
Description:	Proclavaminate amidino hydrolase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
agmatinase activity	3.73238467801147	bayes_pls_golite062009
hydrolase activity	3.56322886233131	bayes_pls_golite062009
arginase activity	3.50076504115011	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.72243397396987	bayes_pls_golite062009
catalytic activity	1.68836803454021	bayes_pls_golite062009
protein deacetylase activity	1.29904902150637	bayes_pls_golite062009
histone deacetylase activity	1.25334418126662	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines	1.01223037319069	bayes_pls_golite062009
deacetylase activity	0.616633535035513	bayes_pls_golite062009
transcription factor binding	0.48632720319646	bayes_pls_golite062009
transcription regulator activity	0.359136428158927	bayes_pls_golite062009
transcription repressor activity	0.13614857264874	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	0.0917282383800223	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: