| Protein: | seq-PA |
| Organism: | Drosophila melanogaster |
| Length: | 882 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for seq-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
507.0 | [0..59] | [607..423] |
|
Region A: Residues: [1-212] |
1 11 21 31 41 51
| | | | | |
1 MQQSRKFEGK IPKLSQTSAA TGGATAAAEA STSKSSQGQQ QQIVYVNMLP AANTLNGIPQ 60
61 QQQQQQYAST DGNVYQLQNE ILCDANGHAV TAATASYQTT ASSPQQQQQQ QQQQQNVATS 120
121 VADNVVTTIS SSSILHTNAN TNGVDTLAAT QQQQQQQQQQ QQQQQQQHYH YITTTGEDGQ 180
181 TPTTIVFENY NGGMPAVSSA APTPVPVSQA NA
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [213-348] |
1 11 21 31 41 51
| | | | | |
1 PATTTTTALV NTDGTIIEFD GSTYEEYHVL KSEPGSSDCL SNGSSAVAAD IIKYDPQHGV 60
61 VGDEEDDDEN GMLHVKYEEQ SLEHDPENEH DAEQEHEYEE YQVIKAEVEA EAAELAAGTT 120
121 SYTISQEQTG SGNTVL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [349-447] |
1 11 21 31 41 51
| | | | | |
1 SSMVPKSGSA AAAKQKRKRK TRVIADDEQG EYLEKMSVRG LDIARYEHII DGVAYCLVCA 60
61 KNDIFKTFKN KYSFQRHAYL FHEGQNRKIF ACPICNKEF
|
| Detection Method: | |
| Confidence: | 18.522879 |
| Match: | 2dlqA |
| Description: | No description for 2dlqA was found. |
| Term | Confidence | Notes |
| binding | 3.10743787485868 | bayes_pls_golite062009 |
| transcription regulator activity | 2.9286072149962 | bayes_pls_golite062009 |
| DNA binding | 2.91902554182176 | bayes_pls_golite062009 |
| nucleic acid binding | 2.84809232393523 | bayes_pls_golite062009 |
| transcription factor activity | 2.01262882344347 | bayes_pls_golite062009 |
| transcription repressor activity | 1.81101516804605 | bayes_pls_golite062009 |
| chromatin binding | 1.30226466791538 | bayes_pls_golite062009 |
| transcription factor binding | 1.1783268121342 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.11260773303318 | bayes_pls_golite062009 |
| transcription activator activity | 1.10770079514261 | bayes_pls_golite062009 |
| protein binding | 1.00484935878505 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.42806308573128 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.18282984873138 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.0300220090535304 | bayes_pls_golite062009 |
|
Region A: Residues: [448-602] |
1 11 21 31 41 51
| | | | | |
1 SRPDKMKMHK KDKHGDVPMP PSATTTPLKA DGPPAKRART ARTPRVRKTK DGSTPTKKRL 60
61 AQIDSVLDDV QNGESLTMAP VSVSHSQQQQ QQQIQHSITT LAPSTPSQPQ HQLQTLPSLD 120
121 FSGMILPGGA QLALANPGAT SSVGLQRGPA TPNGQ
|
| Detection Method: | |
| Confidence: | 56.69897 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
|
Region A: Residues: [603-808] |
1 11 21 31 41 51
| | | | | |
1 PAPPTTTLIY SNQLELQQAL LQQQLQGQSI MIQDQAGNLV PLQLDGTQAI YTTAPQAQRQ 60
61 QTTATYQTTQ QQQQQPAQQP AGQAQQQPHY ELDNVTYLSS TAAATPTSAE QQQQQQQQQH 120
121 VIGTVQSYQI LTPDGLQNFQ PKLETAELGD LCPYSQYTFT THAGAQPTLN ANALDAQTQH 180
181 QQHHQQQQHH HQQQQHHQQT QLLQQQ
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [809-882] |
1 11 21 31 41 51
| | | | | |
1 PFATHHNPHQ QFMELKNELL IKGGDAYTLD TASMYHLPFS PTSMINAVND VNTSSLLETK 60
61 EISYDISEAV LLAL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
