YRC Public Data Repository - Protein Structure Prediction

Protein:	RS12_ARTPT
Organism:	Arthrospira platensis
Length:	124 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS12_ARTPT.

Description	E-value	Query Range	Subject Range
gi\|74275829, gi\|... - gi\|75437463\|ref\|ZP_00733433.1\| 30S ribosomal protein S12 [Actinobacillus succinogenes 130Z], gi\|7427...	198.0	[0..1]	[124..19]
gi\|71730663, gi\|... - gi\|71899534\|ref\|ZP_00681690.1\| Ribosomal protein S12, bacterial and chloroplast form [Xylella fastid...	197.0	[0..1]	[124..42]
RS12_VIBCB - 30S ribosomal protein S12 OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) GN=rpsL PE=3 SV=1 gi\|163802784, gi... - gi\|163802784\|ref\|ZP_02196674.1\| 30S ribosomal protein S12 [Vibrio campbellii AND4], gi\|159173491\|gb\|... RS12_VIBPA - 30S ribosomal protein S12 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=rpsL PE... gi\|90437894, gi\|... - gi\|90580823\|ref\|ZP_01236625.1\| 30S ribosomal protein S12 [Vibrio angustum S14], gi\|90437894\|gb\|EAS63... RS12_VIBPA - 30S ribosomal protein S12 OS=Vibrio parahaemolyticus GN=rpsL PE=3 SV=1 gi\|89049064, gi\|... - gi\|89075242\|ref\|ZP_01161673.1\| 30S ribosomal protein S12 [Photobacterium sp. SKA34], gi\|89049064\|gb\|...	194.0	[0..1]	[124..1]
gi\|56313632, gi\|... - gi\|56477589\|ref\|YP_159178.1\| 30S ribosomal protein S12 [Azoarcus sp. EbN1], gi\|56313632\|emb\|CAI08277...	194.0	[0..1]	[123..13]
RS12_CUPPJ - 30S ribosomal protein S12 OS=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) GN=rpsL PE=3 SV=...	194.0	[0..1]	[124..1]
RS12_VIBVU - 30S ribosomal protein S12 OS=Vibrio vulnificus (strain CMCP6) GN=rpsL PE=3 SV=1 RS12_VIBVY - 30S ribosomal protein S12 OS=Vibrio vulnificus (strain YJ016) GN=rpsL PE=3 SV=1 RS12_VIBVU - 30S ribosomal protein S12 OS=Vibrio vulnificus GN=rpsL PE=3 SV=1	193.0	[0..1]	[124..1]
RS12_CUPNH - 30S ribosomal protein S12 OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) G... RS12_CUPTR - 30S ribosomal protein S12 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rpsL PE=3 SV=1 RS12_CUPTR - 30S ribosomal protein S12 OS=Cupriavidus taiwanensis (strain DSM 17343 / BCRC 17206 / CIP 107171 / L...	193.0	[0..1]	[124..1]
RS12_HISS2 - 30S ribosomal protein S12 OS=Histophilus somni (strain 2336) GN=rpsL PE=3 SV=1 RS12_HAES1 - 30S ribosomal protein S12 OS=Haemophilus somnus (strain 129Pt) GN=rpsL PE=3 SV=1	193.0	[0..1]	[124..1]
gi\|145640559, gi... - gi\|145640559\|ref\|ZP_01796143.1\| 30S ribosomal protein S7 [Haemophilus influenzae R3021], gi\|14498248... RS12_HAEIE - 30S ribosomal protein S12 OS=Haemophilus influenzae (strain PittEE) GN=rpsL PE=3 SV=1 gi\|145268858, gi... - gi\|145637944\|ref\|ZP_01793585.1\| 30S ribosomal protein S7 [Haemophilus influenzae PittHH], gi\|1452688... gi\|145638509, gi... - gi\|145638509\|ref\|ZP_01794118.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Ha... gi\|144985831, gi... - gi\|145633462\|ref\|ZP_01789191.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Ha... gi\|145266881, gi... - gi\|145635869\|ref\|ZP_01791559.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Ha... gi\|145629759, gi... - gi\|145629759\|ref\|ZP_01785554.1\| 30S ribosomal protein S7 [Haemophilus influenzae 22.1-21], gi\|144977... gi\|145275145, gi... - gi\|145640559\|ref\|ZP_01796143.1\| 30S ribosomal protein S7 [Haemophilus influenzae R3021], gi\|14563188... RS12_HAEIN - 30S ribosomal protein S12 OS=Haemophilus influenzae GN=rpsL PE=3 SV=2 RS12_ACTP7 - 30S ribosomal protein S12 OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=rpsL PE=3 S... gi\|42630028 - gi\|42630028\|ref\|ZP_00155573.1\| COG0048: Ribosomal protein S12 [Haemophilus influenzae R2846] gi\|42630860 - gi\|42630860\|ref\|ZP_00156399.1\| COG0048: Ribosomal protein S12 [Haemophilus influenzae R2866] RS12_MANHA - 30S ribosomal protein S12 OS=Mannheimia haemolytica GN=rpsL PE=3 SV=2 RS12_HAEIN - 30S ribosomal protein S12 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=r... RS12_HAEIG - 30S ribosomal protein S12 OS=Haemophilus influenzae (strain PittGG) GN=rpsL PE=3 SV=1 gi\|251793283, gi... - gi\|251793283\|ref\|YP_003008011.1\| ribosomal protein S12 [Aggregatibacter aphrophilus NJ8700], gi\|2475... gi\|240950123, gi... - gi\|240950123\|ref\|ZP_04754416.1\| 30S ribosomal protein S12 [Actinobacillus minor NM305], gi\|240295392... gi\|229809646, gi... - gi\|229847408\|ref\|ZP_04467508.1\| 30S ribosomal protein S12 [Haemophilus influenzae 7P49H1], gi\|229809... gi\|229811399, gi... - gi\|229845661\|ref\|ZP_04465785.1\| 30S ribosomal protein S12 [Haemophilus influenzae 6P18H1], gi\|229811... RS12_ACTPJ - 30S ribosomal protein S12 OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=rpsL PE=3 S... RS12_HAEI8 - 30S ribosomal protein S12 OS=Haemophilus influenzae (strain 86-028NP) GN=rpsL PE=3 SV=1 RS12_ACTP2 - 30S ribosomal protein S12 OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=rpsL PE=3 S...	193.0	[0..1]	[124..1]
RS12_RALPJ - 30S ribosomal protein S12 OS=Ralstonia pickettii (strain 12J) GN=rpsL PE=3 SV=1 RS12_RALSO - 30S ribosomal protein S12 OS=Ralstonia solanacearum (strain GMI1000) GN=rpsL PE=3 SV=1 RS12_RALSO - 30S ribosomal protein S12 OS=Ralstonia solanacearum GN=rpsL PE=3 SV=1 gi\|207744582, gi... - gi\|207744582\|ref\|YP_002260974.1\| 30s ribosomal protein s12 [Ralstonia solanacearum IPO1609], gi\|2065... gi\|206587073, gi... - gi\|207721904\|ref\|YP_002252342.1\| 30s ribosomal protein s12 [Ralstonia solanacearum MolK2], gi\|206587... gi\|83749346, gi\|... - gi\|83749346\|ref\|ZP_00946342.1\| SSU ribosomal protein S12P [Ralstonia solanacearum UW551], gi\|8372397... gi\|241664537, gi... - gi\|241664537\|ref\|YP_002982897.1\| ribosomal protein S12 [Ralstonia pickettii 12D], gi\|240866564\|gb\|AC...	193.0	[0..1]	[124..1]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTIQQLIRS AREKTDKKTK SPALKSCPQR RGVCTRVYTT TPKKPNSALR KVARVRLTSG  60
   61 FEVTAYIPGI GHNLQEHSVV MIRGGRVKDL PGVRYHIIRG TLDTAGVKDR RNGRSKYGAK 120
  121 RPKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.69897
Match:	1vs5L
Description:	No description for 1vs5L was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	7.45319063235379	bayes_pls_golite062009
structural molecule activity	6.87843523680097	bayes_pls_golite062009
misfolded RNA binding	4.4877915495248	bayes_pls_golite062009
nucleic acid binding	3.7132569326175	bayes_pls_golite062009
RNA binding	3.30183895019873	bayes_pls_golite062009
DNA binding	2.94486937698231	bayes_pls_golite062009
	2.80746531284205	bayes_pls_golite062009
binding	2.40532042551671	bayes_pls_golite062009
mRNA binding	1.65819015373151	bayes_pls_golite062009
translation regulator activity	1.46320772716954	bayes_pls_golite062009
translation factor activity, nucleic acid binding	1.40718318783582	bayes_pls_golite062009
translation initiation factor activity	1.27539679024898	bayes_pls_golite062009
transcription regulator activity	1.24522359765541	bayes_pls_golite062009
protein binding	1.20309946451799	bayes_pls_golite062009
structure-specific DNA binding	1.10289736160471	bayes_pls_golite062009
single-stranded DNA binding	0.96886436248958	bayes_pls_golite062009
ribonuclease activity	0.91658673456122	bayes_pls_golite062009
transcription factor activity	0.672797026326101	bayes_pls_golite062009
transcription activator activity	0.581984534552921	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	0.474251377131502	bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds	0.47336621289748	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	0.47336621289748	bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters	0.438266295385131	bayes_pls_golite062009
exoribonuclease activity	0.39131721416336	bayes_pls_golite062009
sequence-specific DNA binding	0.3506031439435	bayes_pls_golite062009
nuclease activity	0.17660139576327	bayes_pls_golite062009
RNA polymerase activity	0.1542034177713	bayes_pls_golite062009
DNA-directed RNA polymerase activity	0.1542034177713	bayes_pls_golite062009
transcription factor binding	0.132487446755259	bayes_pls_golite062009
3'-5'-exoribonuclease activity	0.0717589400404304	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: