| Protein: | ATG4A_ORYSJ |
| Organism: | Oryza sativa Japonica Group |
| Length: | 474 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATG4A_ORYSJ.
| Description | E-value | Query Range |
Subject Range |
|
|
598.0 | [0..1] | [474..51] |
|
Region A: Residues: [1-95] |
1 11 21 31 41 51
| | | | | |
1 MTSLPGRGVS PSSSDPLCEG NAAPSSSSSS GQDLKQLKNS ILSCVFSSPF SIFEAHQDSS 60
61 ANRSLKPHSG SYAWSRFLRR IACTGSMWRF LGASK
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [96-474] |
1 11 21 31 41 51
| | | | | |
1 ALTSSDVWFL GKCYKLSSEE LSNSSDCESG NAAFLEDFSS RIWITYRKGF DAISDSKYTS 60
61 DVNWGCMVRS SQMLVAQALI FHHLGRSWRK PSQKPYSPEY IGILHMFGDS EACAFSIHNL 120
121 LQAGKSYGLA AGSWVGPYAM CRAWQTLVCT NREHHEAVDG NGNFPMALYV VSGDEDGERG 180
181 GAPVVCIDVA AQLCCDFNKN QSTWSPILLL VPLVLGLDKL NPRYIPLLKE TLTFPQSLGI 240
241 LGGKPGTSTY IAGVQDDRAL YLDPHEVQLA VDIAADNLEA GTSSYHCSTV RDLALDLIDP 300
301 SLAIGFYCRD KDDFDDFCSR ASELVDKANG APLFTVVQSV QPSKQMYNEE SSSGDGMDSI 360
361 NVEGLDGSGE TGEEEWQIL
|
| Detection Method: | |
| Confidence: | 143.0 |
| Match: | 2d1iA |
| Description: | Structure of human Atg4b |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| peptidase activity | 4.90619850296986 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 4.64381885397949 | bayes_pls_golite062009 |
| endopeptidase activity | 3.75054525912786 | bayes_pls_golite062009 |
| cysteine-type peptidase activity | 3.05412701733177 | bayes_pls_golite062009 |
| hydrolase activity | 2.66167923792227 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 2.13397229861051 | bayes_pls_golite062009 |
| small conjugating protein-specific protease activity | 2.06332547782769 | bayes_pls_golite062009 |
| cysteine-type endopeptidase activity | 1.95802900199539 | bayes_pls_golite062009 |
| tubulin binding | 1.85112496470487 | bayes_pls_golite062009 |
| microtubule binding | 1.82320858139311 | bayes_pls_golite062009 |
| binding | 1.77258741259391 | bayes_pls_golite062009 |
| ubiquitin-specific protease activity | 1.43988355875744 | bayes_pls_golite062009 |
| protein binding | 1.08139200376412 | bayes_pls_golite062009 |
| catalytic activity | 1.05972260874031 | bayes_pls_golite062009 |
| nucleic acid binding | 0.913227912866975 | bayes_pls_golite062009 |
| transporter activity | 0.69523261160023 | bayes_pls_golite062009 |
| DNA binding | 0.683141655614916 | bayes_pls_golite062009 |
| transcription regulator activity | 0.667279936700542 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.467924587720185 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.439003000540428 | bayes_pls_golite062009 |
| structural molecule activity | 0.297752217869698 | bayes_pls_golite062009 |
| calcium-dependent cysteine-type endopeptidase activity | 0.196538841514154 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.125654358663332 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.0241561776323942 | bayes_pls_golite062009 |
| transcription factor activity | 0.0199148741009585 | bayes_pls_golite062009 |
