YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16331081, gi\|...
Organism:	Synechocystis sp. PCC 6803
Length:	446 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16331081, gi|....

Description	E-value	Query Range	Subject Range
gi\|75704283, gi\|... - gi\|75910558\|ref\|YP_324854.1\| extracellular ligand-binding receptor [Anabaena variabilis ATCC 29413],...	337.0	[0..1]	[446..1]
gi\|25297687 - pir\|\|AI2049 substrate-binding protein of ABC transporter all1951 [imported] - Nostoc sp. (strain PCC... gi\|17131041, gi\|... - gi\|17229443\|ref\|NP_485991.1\| substrate-binding protein of ABC transporter [Nostoc sp. PCC 7120], gi\|...	329.0	[0..1]	[446..1]
gi\|22298663, gi\|... - gi\|22298663\|ref\|NP_681910.1\| ABC transporter substrate-binding protein [Thermosynechococcus elongatu...	328.0	[0..1]	[446..1]
gi\|110165085, gi... - gi\|71677988\|ref\|ZP_00675720.1\| Extracellular ligand-binding receptor [Trichodesmium erythraeum IMS10...	318.0	[0..1]	[444..1]
gi\|23127981 - gi\|23127981\|ref\|ZP_00109838.1\| COG0683: ABC-type branched-chain amino acid transport systems, peripl...	303.0	[0..54]	[445..26]
gi\|196252144, gi... - gi\|196252144\|ref\|ZP_03150806.1\| urea ABC transporter, urea binding protein [Clostridium thermocellum... gi\|125974327, gi... - gi\|67874946\|ref\|ZP_00504497.1\| Extracellular ligand-binding receptor [Clostridium thermocellum ATCC ...	297.0	[0..8]	[427..10]
gi\|146297472, gi... - gi\|82499532\|ref\|ZP_00884975.1\| ABC transporter (substrate-binding protein) [Caldicellulosiruptor sac...	295.0	[0..55]	[425..45]
gi\|113954254, gi... - gi\|113954254\|ref\|YP_732059.1\| urea ABC transporter, periplasmic urea-binding protein [Synechococcus ...	294.0	[0..1]	[444..28]
gi\|56420472, gi\|... - gi\|56420472\|ref\|YP_147790.1\| ABC transporter (substrate-binding protein) [Geobacillus kaustophilus H...	292.0	[0..7]	[427..1]
gi\|86558006, gi\|... - gi\|86609464\|ref\|YP_478226.1\| urea ABC transporter, periplasmic urea-binding protein [Synechococcus s... gi\|86609464 - gi\|86609464\|ref\|YP_478226.1\| urea ABC transporter, periplasmic urea-binding protein [Cyanobacteria b...	286.0	[0..48]	[446..34]

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Predicted Domain #1

Region A:
Residues: [1-446]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNPFGRRKF LLYGSATLGA SLLLKACGGG TEPTTEPTAE PTESPTTGTA PTGEPIKVGL  60
   61 LHSLSGTMAI SETTVVEAAE LAIEEINAAG GVLGRPIEAI KEDGASDWPT FAEKAAKLID 120
  121 QDKVPVVFGC WTSASRKAVL PVFEAKNHML WYPVQYEGQE CSKNIFYTGA APNQQIEPAV 180
  181 DWLLENKGNK FFLVGSDYVF PRTANTIIKE QLKAKGGETL GEDYLPLGNT EVTPIITKIR 240
  241 EALPDGGVIF NTLNGDSNVA FFKQIQAAGL TPDKYPVMSV SVAEEEVRQI GKEYLLGQFA 300
  301 SWNYFQSVDT PANQKFVAAF KAKYGEDRVT NDPMEAAYIS VYLWKAAVEA AGDVGETPEG 360
  361 LEKVRAAAIG KTFDAPEGMV TMQPNHHISK TVRIGEVNDE GQFTIVWSSD GPVDPIPWNQ 420
  421 FVPETKGFTC DWTRTDVENP GKFKAS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.221849
Match:	1qnlA
Description:	Amide receptor/negative regulator of the amidase operon (AmiC)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
branched-chain aliphatic amino acid transmembrane transporter activity	3.7094985892895	bayes_pls_golite062009
organic acid transmembrane transporter activity	3.3282400857765	bayes_pls_golite062009
carboxylic acid transmembrane transporter activity	3.32303665976296	bayes_pls_golite062009
active transmembrane transporter activity	3.14254368886325	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	3.05849017364472	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	3.05812363262219	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	3.05812363262219	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	3.04729983956777	bayes_pls_golite062009
primary active transmembrane transporter activity	3.03783870537114	bayes_pls_golite062009
amino acid binding	2.9829321098614	bayes_pls_golite062009
amine transmembrane transporter activity	2.69177924009362	bayes_pls_golite062009
ATPase activity, coupled	2.43201101487102	bayes_pls_golite062009
transporter activity	2.38484762987442	bayes_pls_golite062009
transmembrane transporter activity	2.17647901857768	bayes_pls_golite062009
amine binding	2.14848643835561	bayes_pls_golite062009
ATPase activity	2.12746564626902	bayes_pls_golite062009
binding	2.08205829478056	bayes_pls_golite062009
amino acid transmembrane transporter activity	1.77461872803738	bayes_pls_golite062009
substrate-specific transporter activity	1.58555411898804	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	1.46159441266612	bayes_pls_golite062009
transcription regulator activity	1.29876905568934	bayes_pls_golite062009
hydrolase activity	1.03156438993666	bayes_pls_golite062009
glutamate receptor activity	0.953525887153408	bayes_pls_golite062009
DNA binding	0.745652072025006	bayes_pls_golite062009
transcription factor activity	0.720083012643756	bayes_pls_golite062009
nucleic acid binding	0.620037783779638	bayes_pls_golite062009
receptor activity	0.428019900700255	bayes_pls_golite062009
signal transducer activity	0.157942702336853	bayes_pls_golite062009
molecular transducer activity	0.157942702336853	bayes_pls_golite062009
ion transmembrane transporter activity	0.123126518349198	bayes_pls_golite062009
transmembrane receptor activity	0.0875751493756519	bayes_pls_golite062009
protein binding	0.0869557265373889	bayes_pls_golite062009
G-protein coupled receptor activity	0.0115883143490402	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: