YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30253889, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	305 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30253889, gi|....

Description	E-value	Query Range	Subject Range
gi\|47553913, gi\|... - gi\|47569405\|ref\|ZP_00240087.1\| ferrichrome-binding protein [Bacillus cereus G9241], gi\|47553913\|gb\|E...	1.0E-75	[1..305]	[1..305]
gi\|42735448, gi\|... - gi\|42779532\|ref\|NP_976779.1\| iron compound ABC transporter, iron compound-binding protein [Bacillus ...	2.0E-75	[1..305]	[1..305]
gi\|49480054, gi\|... - gi\|49480054\|ref\|YP_034670.1\| ferrichrome-binding periplasmic protein [Bacillus thuringiensis serovar...	3.0E-75	[1..305]	[1..305]
gi\|75763802, gi\|... - gi\|75763802\|ref\|ZP_00743460.1\| Ferrichrome-binding protein [Bacillus thuringiensis serovar israelens... gi\|218541141, gi... - gi\|218895459\|ref\|YP_002443870.1\| iron compound ABC transporter, iron compound-binding protein [Bacil... gi\|228899060, gi... - gi\|228899060\|ref\|ZP_04063332.1\| Ferrichrome-binding periplasmic protein [Bacillus thuringiensis IBL ... gi\|228796261, gi... - gi\|228963441\|ref\|ZP_04124601.1\| Ferrichrome-binding periplasmic protein [Bacillus thuringiensis sero...	1.0E-74	[1..305]	[1..305]
gi\|228937629, gi... - gi\|228937629\|ref\|ZP_04100266.1\| Ferrichrome-binding periplasmic protein [Bacillus thuringiensis sero... gi\|228675408, gi... - gi\|229108008\|ref\|ZP_04237634.1\| Ferrichrome-binding periplasmic protein [Bacillus cereus Rock1-15], ... gi\|229042237, gi... - gi\|229042237\|ref\|ZP_04189990.1\| Ferrichrome-binding periplasmic protein [Bacillus cereus AH676], gi\|... gi\|228977087, gi... - gi\|228977087\|ref\|ZP_04137489.1\| Ferrichrome-binding periplasmic protein [Bacillus thuringiensis Bt40... gi\|228789249, gi... - gi\|228970517\|ref\|ZP_04131168.1\| Ferrichrome-binding periplasmic protein [Bacillus thuringiensis sero... gi\|229143128, gi... - gi\|229143128\|ref\|ZP_04271560.1\| Ferrichrome-binding periplasmic protein [Bacillus cereus BDRD-ST24],... gi\|229125835, gi... - gi\|229125835\|ref\|ZP_04254860.1\| Ferrichrome-binding periplasmic protein [Bacillus cereus BDRD-Cer4],... gi\|30018591, gi\|... - gi\|30018591\|ref\|NP_830222.1\| ferrichrome-binding protein [Bacillus cereus ATCC 14579], gi\|29894132\|g...	2.0E-74	[1..305]	[1..306]
gi\|163860538, gi... - gi\|89204751\|ref\|ZP_01183327.1\| Periplasmic binding protein [Bacillus weihenstephanensis KBAB4], gi\|8... gi\|228745588, gi... - gi\|229015731\|ref\|ZP_04172713.1\| Ferrichrome-binding periplasmic protein [Bacillus cereus AH1273], gi... gi\|228751453, gi... - gi\|229009835\|ref\|ZP_04167055.1\| Ferrichrome-binding periplasmic protein [Bacillus mycoides DSM 2048]... gi\|229021931, gi... - gi\|229021931\|ref\|ZP_04178493.1\| Ferrichrome-binding periplasmic protein [Bacillus cereus AH1272], gi...	4.0E-74	[1..304]	[1..304]
gi\|152022921, gi... - gi\|89200029\|ref\|ZP_01178785.1\| Periplasmic binding protein [Bacillus cereus subsp. cytotoxis NVH 391...	5.0E-74	[1..304]	[1..304]
gi\|171991299, gi... - gi\|68056221\|ref\|ZP_00540350.1\| Periplasmic binding protein [Exiguobacterium sibiricum 255-15], gi\|68...	8.0E-64	[1..304]	[1..302]
gi\|25329958 - pir\|\|B84136 ferrichrome ABC transporter (ferrichrome-binding protein) fhuD [imported] - Bacillus hal... gi\|10176515, gi\|... - gi\|15616452\|ref\|NP_244758.1\| ferrichrome ABC transporter (ferrichrome-binding protein) [Bacillus hal...	2.0E-63	[15..305]	[19..308]

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Predicted Domain #1

Region A:
Residues: [1-305]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLFISLTV LFVLVMSACS NGSTDKKNDA KGSKSETITY QSENGKVEVP ANPKRVVVLS  60
   61 SFAGNVMSLG VNLVGVDSWS KQNPRFDSKL KDVAEVSDEN VEKIAELNPD LIIGLSNIKN 120
  121 VDKLKKIAPT VTYTYGKVDY LTQHLEIGKL LNKEKEAKTW VDDFKKRAQD AGKEIKAKIG 180
  181 EDATVSVVEN FNKQLYVYGE NWGRGTEILY QEMKLKMPEK VKEKALKEGY YALSTEVLPE 240
  241 FAGDYLIVSK NKDTDNSFQE TESYKNIPAV KNNRVYEANM MEFYFNDPLT LDFQLDFFKK 300
  301 SFLGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.39794
Match:	2chuA
Description:	No description for 2chuA was found.

Predicted functions:

Term	Confidence	Notes
cation transmembrane transporter activity	4.96030838349428	bayes_pls_golite062009
ion transmembrane transporter activity	4.85933409056132	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	4.64708183124764	bayes_pls_golite062009
metal ion transmembrane transporter activity	4.62870308436205	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	4.44345947815704	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	3.95017502365289	bayes_pls_golite062009
transporter activity	3.67298279110452	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	3.56062035963756	bayes_pls_golite062009
iron ion transmembrane transporter activity	3.49993672446255	bayes_pls_golite062009
transmembrane transporter activity	3.28968508115123	bayes_pls_golite062009
substrate-specific transporter activity	2.58693520442871	bayes_pls_golite062009
primary active transmembrane transporter activity	2.54812677397783	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	2.5446605673848	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	2.52703679403613	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	2.52398066978703	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	2.52350775380228	bayes_pls_golite062009
active transmembrane transporter activity	2.44277891725345	bayes_pls_golite062009
ATPase activity, coupled	1.89049387988996	bayes_pls_golite062009
ATPase activity	1.65488400668431	bayes_pls_golite062009
nucleoside-triphosphatase activity	1.59760820263042	bayes_pls_golite062009
pyrophosphatase activity	1.52739129331837	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.50948117450196	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.50661057394414	bayes_pls_golite062009
binding	1.19129262734542	bayes_pls_golite062009
iron ion binding	0.563791988550429	bayes_pls_golite062009
transition metal ion binding	0.515669856826557	bayes_pls_golite062009
hydrolase activity	0.278951435658903	bayes_pls_golite062009
cation binding	0.030562364093132	bayes_pls_golite062009
metal ion binding	0.030562364093132	bayes_pls_golite062009
ion binding	0.0283898073513612	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: