YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30254905, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	309 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30254905, gi|....

Description	E-value	Query Range	Subject Range
gi\|580897 - gi\|580897\|emb\|CAA39788.1\| OppB [Bacillus subtilis]	6.0E-63	[1..309]	[1..309]
gi\|90821861, gi\|... - gi\|90962667\|ref\|YP_536583.1\| oligopeptide transport system permease protein [Lactobacillus salivariu...	2.0E-61	[1..307]	[1..307]
gi\|221322507 - gi\|221322507\|ref\|ZP_03603801.1\| oligopeptide ABC transporter (permease) [Bacillus subtilis subsp. su... gi\|221313309 - gi\|221313309\|ref\|ZP_03595114.1\| oligopeptide ABC transporter (permease) [Bacillus subtilis subsp. su... gi\|221318233 - gi\|221318233\|ref\|ZP_03599527.1\| oligopeptide ABC transporter (permease) [Bacillus subtilis subsp. su... OPPB_BACSU - Oligopeptide transport system permease protein OppB OS=Bacillus subtilis (strain 168) GN=oppB PE=2 S... OPPB_BACSU - Oligopeptide transport system permease protein oppB OS=Bacillus subtilis GN=oppB PE=2 SV=2	4.0E-61	[1..309]	[1..309]
gi\|149950530, gi... - gi\|77683644\|ref\|ZP_00799090.1\| Binding-protein-dependent transport systems inner membrane component ...	5.0E-61	[1..305]	[1..307]
gi\|52079642, gi\|... - gi\|52785005\|ref\|YP_090834.1\| hypothetical protein BLi01233 [Bacillus licheniformis ATCC 14580], gi\|5...	6.0E-61	[1..309]	[1..309]
gi\|73663103, gi\|... - gi\|73663103\|ref\|YP_301884.1\| ABC-type dipeptide oligopeptide nickel transport system permease compon...	6.0E-61	[1..309]	[1..308]
gi\|90416025\|ref\|... - putative oligopeptide ABC transporter, permease protein [marine gamma proteobacterium HTCC2207] gi\|90416025, gi\|... - gi\|90416025\|ref\|ZP_01223958.1\| putative oligopeptide ABC transporter, permease protein [marine gamma...	8.0E-61	[1..307]	[1..308]
gi\|89087264, gi\|... - gi\|89098101\|ref\|ZP_01170987.1\| OppB [Bacillus sp. NRRL B-14911], gi\|89087264\|gb\|EAR66379.1\| OppB [Ba...	1.0E-60	[1..309]	[1..309]
gi\|68526086, gi\|... - gi\|94310351\|ref\|YP_583561.1\| binding-protein-dependent transport systems inner membrane component [R...	2.0E-60	[1..305]	[1..306]
gi\|89346610, gi\|... - gi\|89901873\|ref\|YP_524344.1\| binding-protein-dependent transport systems inner membrane component [R...	3.0E-60	[1..305]	[1..306]

Back

Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRYVLKRFV YMALTLFLIT TLTFFLMKLL PGSPLKNQEK LSPAQKEIIL EKYGLNDPVP  60
   61 VQYARYLGNL AKGDLGVSFQ YDNR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [85-309]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVTDMIVDRI GPSAQLGLQA IILGTFIGLI LGIVAALRNN TWVDYGATII SVLGMSVPSF  60
   61 VFAALLQYFV GVKLGWFPVA FWKGPEFTVM PTIALSMAVI ATIARFARAE LIEVMQADYI 120
  121 LTAKAKGISQ GVIIIKHALR NALIPVVTIL GPMVAGLITG TLVIEQIYAV PGLGEQFVKS 180
  181 ITVNDYTVIM GTTIFYSAIF ILVIFIVDIL YGIIDPRIRL AGGKK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.3
Match:	2onkC
Description:	No description for 2onkC was found.

Predicted functions:

Term	Confidence	Notes
ATPase activity, coupled to transmembrane movement of substances	7.61517440483825	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	7.61475955752567	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	7.61475955752567	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	7.60261285611608	bayes_pls_golite062009
primary active transmembrane transporter activity	7.59280303111267	bayes_pls_golite062009
active transmembrane transporter activity	7.51217805691059	bayes_pls_golite062009
ATPase activity, coupled	6.95724531600418	bayes_pls_golite062009
ATPase activity	6.62620720611918	bayes_pls_golite062009
nucleoside-triphosphatase activity	6.31173441402571	bayes_pls_golite062009
pyrophosphatase activity	6.23822548232138	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	6.21828378422716	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	6.21791205758921	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	5.46058403247103	bayes_pls_golite062009
ion transmembrane transporter activity	4.84048533553771	bayes_pls_golite062009
hydrolase activity	4.5940497987178	bayes_pls_golite062009
cation transmembrane transporter activity	4.17977204081224	bayes_pls_golite062009
transporter activity	4.16850252614298	bayes_pls_golite062009
transmembrane transporter activity	4.07281957844021	bayes_pls_golite062009
substrate-specific transporter activity	3.61142533583701	bayes_pls_golite062009
metal ion transmembrane transporter activity	2.9260252024097	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	2.85525880225875	bayes_pls_golite062009
iron ion transmembrane transporter activity	2.46453467908178	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	2.19359047382598	bayes_pls_golite062009
sugar transmembrane transporter activity	2.147054904918	bayes_pls_golite062009
sulfate transmembrane-transporting ATPase activity	2.12981939421008	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	1.90343616526346	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	1.6718548573993	bayes_pls_golite062009
oligosaccharide-transporting ATPase activity	1.62768691451517	bayes_pls_golite062009
oligosaccharide transmembrane transporter activity	1.62768691451517	bayes_pls_golite062009
maltose-transporting ATPase activity	1.62768691451517	bayes_pls_golite062009
alpha-glucoside transmembrane transporter activity	1.5877861023737	bayes_pls_golite062009
maltose transmembrane transporter activity	1.5877861023737	bayes_pls_golite062009
disaccharide transmembrane transporter activity	1.5877861023737	bayes_pls_golite062009
glucoside transmembrane transporter activity	1.54998466398412	bayes_pls_golite062009
anion transmembrane transporter activity	1.53656434391799	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	1.4745579365074	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	0.737817335114385	bayes_pls_golite062009
secondary active transmembrane transporter activity	0.634824157502542	bayes_pls_golite062009
catalytic activity	0.350058049038907	bayes_pls_golite062009
sulfate transmembrane transporter activity	0.314028059232496	bayes_pls_golite062009
solute:cation symporter activity	0.0914244193736007	bayes_pls_golite062009
symporter activity	0.0914244193736007	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: