YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261424, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	358 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261424, gi|....

Description	E-value	Query Range	Subject Range
gi\|228656676, gi... - gi\|229126736\|ref\|ZP_04255748.1\| 2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonat... gi\|228674645, gi... - gi\|229108876\|ref\|ZP_04238481.1\| 2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonat... gi\|228957692, gi... - gi\|228957692\|ref\|ZP_04119438.1\| 2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonat... gi\|228852557, gi... - gi\|228907053\|ref\|ZP_04070917.1\| 2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonat... gi\|228633832, gi... - gi\|229149622\|ref\|ZP_04277853.1\| 2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonat... gi\|229144025, gi... - gi\|229144025\|ref\|ZP_04272441.1\| 2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonat... gi\|30019474, gi\|... - gi\|30019474\|ref\|NP_831105.1\| 2-aminoethylphosphonate-binding protein [Bacillus cereus ATCC 14579], g...	8.0E-56	[1..358]	[1..358]
gi\|228651264, gi... - gi\|229132216\|ref\|ZP_04261073.1\| 2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonat... gi\|229010717, gi... - gi\|229010717\|ref\|ZP_04167914.1\| 2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonat... gi\|163939228, gi... - gi\|89204452\|ref\|ZP_01183029.1\| extracellular solute-binding protein, family 1 [Bacillus weihenstepha...	4.0E-55	[1..358]	[1..358]
gi\|42780510, gi\|... - gi\|42780510\|ref\|NP_977757.1\| iron compound ABC transporter, iron compound-binding protein, putative ...	6.0E-53	[13..358]	[1..346]
gi\|47566210, gi\|... - gi\|47566210\|ref\|ZP_00237238.1\| ABC transporter, periplasmic binding protein [Bacillus cereus G9241],...	9.0E-53	[13..358]	[1..346]
gi\|12018055 - gi\|12018055\|gb\|AAG45384.1\|AF307052_16 putative solute binding lipoprotein [Pyrococcus furiosus] gi\|18893923, gi\|... - gi\|18978123\|ref\|NP_579480.1\| putative solute binding lipoprotein [Pyrococcus furiosus DSM 3638], gi\|...	1.0E-51	[1..358]	[1..351]
gi\|12018071 - gi\|12018071\|gb\|AAG45399.1\|AF307053_14 putative solute binding lipoprotein [Thermococcus litoralis]	3.0E-51	[1..358]	[1..351]
gi\|89151065, gi\|... - gi\|89200904\|ref\|ZP_01179653.1\| extracellular solute-binding protein, family 1 [Bacillus cereus subsp...	1.0E-49	[5..358]	[2..356]
gi\|28202472, gi\|... - gi\|28210037\|ref\|NP_780981.1\| iron(III)-binding periplasmic protein precursor [Clostridium tetani E88...	2.0E-49	[2..350]	[16..355]
gi\|115252586, gi... - gi\|126701149\|ref\|YP_001090046.1\| putative iron ABC transporter, solute-binding protein [Clostridium ...	3.0E-49	[1..357]	[1..354]
gi\|15140867, gi\|... - gi\|16264729\|ref\|NP_437521.1\| putative iron uptake ABC transporter periplasmic solute-binding protein... gi\|25503153 - pir\|\|E95964 probable iron uptake ABC transporter periplasmic solute-binding protein precursor SMb215...	4.0E-49	[24..357]	[9..339]

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Predicted Domain #1

Region A:
Residues: [1-358]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKTIFKAVA TGMVFSLLMG CGAKKEESAG AKVKDDKLSG SLTVYTAIEE ELVPIYLDSF  60
   61 KKKYPDVKLN IVRDSTGVIT AKLLAEGKNT QADVVWGTAA SSLLALDKKD MLKGYSPKGA 120
  121 DRVLPQFKDD KQPEKWVGNT AFMTGIAINK EELKKKNLPM PESYEDLTKP EYKGTLVMPH 180
  181 PASSGTGFLT VSAWLQIMGE DKGWDYMKKL HDNMATYTHS GSKPAKLAGA GEYPVGVSMV 240
  241 YSALKEKQKG APVEVVLPKE GLGWEVEANA LIKKDNAKNE KLAQAFLDWA ITDDVMKLYF 300
  301 EKNGFATIKN DYKLPDGFPK DVTEKLYKKN DFKWAAENRD KILEKWEKEF GQKAEPKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.0
Match:	1y4tA
Description:	Ferric binding protein from Campylobacter jejuni
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
substrate-specific transmembrane transporter activity	2.80786841862036	bayes_pls_golite062009
transporter activity	2.37767937786605	bayes_pls_golite062009
ion transmembrane transporter activity	2.19564149972908	bayes_pls_golite062009
transmembrane transporter activity	2.14027396604232	bayes_pls_golite062009
iron ion transmembrane transporter activity	2.07796572166764	bayes_pls_golite062009
active transmembrane transporter activity	1.98824826924235	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	1.93190645114894	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	1.92247368464925	bayes_pls_golite062009
primary active transmembrane transporter activity	1.91778402126342	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	1.91458600392598	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	1.91458600392598	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	1.91424996753266	bayes_pls_golite062009
ATPase activity, coupled	1.59154512845516	bayes_pls_golite062009
substrate-specific transporter activity	1.51716707550629	bayes_pls_golite062009
ATPase activity	1.44327228942016	bayes_pls_golite062009
nucleoside-triphosphatase activity	1.36989838880058	bayes_pls_golite062009
pyrophosphatase activity	1.33033652028872	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.31993399326424	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.31926578892427	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	1.06410714245	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	1.06102061998642	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	0.919969356414241	bayes_pls_golite062009
metal ion transmembrane transporter activity	0.905841740890819	bayes_pls_golite062009
anion transmembrane transporter activity	0.89537702998218	bayes_pls_golite062009
binding	0.841985743602294	bayes_pls_golite062009
cation transmembrane transporter activity	0.799357659531325	bayes_pls_golite062009
hydrolase activity	0.52200036125335	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	0.51863158413478	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	0.301206065600289	bayes_pls_golite062009
catalytic activity	0.278324746769832	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: