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View Structure Prediction Details

Protein: gi|13621479, gi|...
Organism: Streptococcus pyogenes M1 GAS
Length: 575 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|13621479, gi|....

Description E-value Query
Range		 Subject
Range
gi|139473033, gi... - gi|139473033|ref|YP_001127748.1| putative glycine-betaine binding permease protein [Streptococcus py...
gi|50902624, gi|... - gi|50913550|ref|YP_059522.1| glycine betaine transport system permease protein [Streptococcus pyogen...
 493.0 [0..1] [575..1]

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Predicted Domain #1
Region A:
Residues: [1-295] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METILQTKLP VAQLVEQLTE WLTKTFSGLF DIMQVVGSFL MDWMTKTLLF IHPLLFIVLV  60
   61 TAGMFFLAKK KWPLPTFTLL GLLFIYNQGL WKQLMNTFTL VLVASLISVL IGIPLGIWMA 120
  121 KNATVRQIVN PILDFMQTMP AFVYLIPAVA FFGIGMVPGV FASVIFALPP TVRFTNLAIR 180
  181 DIPTELIEAS DAFGSTGKQK LFKVELPLAK NTIMAGVNQT MMLALSMVVT GSMIGAPGLG 240
  241 REVLSALQHA DIGSGFVSGL ALVILAIVLD RMTQLFNSKP QEKAKAGKTN KWIGL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.221849
Match: 2onkC
Description: No description for 2onkC was found.

Predicted functions:

Term Confidence Notes
substrate-specific transmembrane transporter activity 3.90877533326679 bayes_pls_golite062009
ion transmembrane transporter activity 3.04751896510563 bayes_pls_golite062009
transporter activity 2.92901170384371 bayes_pls_golite062009
transmembrane transporter activity 2.82231503501622 bayes_pls_golite062009
active transmembrane transporter activity 2.62912035749387 bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity 2.58567076459772 bayes_pls_golite062009
primary active transmembrane transporter activity 2.58112472232827 bayes_pls_golite062009
ATPase activity, coupled to movement of substances 2.57722913421807 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances 2.57722913421807 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances 2.57687258170314 bayes_pls_golite062009
cation transmembrane transporter activity 2.28111291142378 bayes_pls_golite062009
ATPase activity, coupled 2.26533438516544 bayes_pls_golite062009
ATPase activity 2.12523930663356 bayes_pls_golite062009
substrate-specific transporter activity 2.08705004234574 bayes_pls_golite062009
nucleoside-triphosphatase activity 2.06571106810861 bayes_pls_golite062009
pyrophosphatase activity 2.02843508794757 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 2.01869168199434 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 2.01800287925825 bayes_pls_golite062009
hydrolase activity 1.27489880499396 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions 0.86861612741394 bayes_pls_golite062009
catalytic activity 0.79821499476005 bayes_pls_golite062009
anion transmembrane-transporting ATPase activity 0.689648105332081 bayes_pls_golite062009
inorganic anion transmembrane transporter activity 0.67740655647842 bayes_pls_golite062009
carbohydrate transmembrane transporter activity 0.56369901852468 bayes_pls_golite062009
amine transmembrane transporter activity 0.525383483850367 bayes_pls_golite062009
anion transmembrane transporter activity 0.52374242151885 bayes_pls_golite062009
sugar transmembrane transporter activity 0.44915416750675 bayes_pls_golite062009
amino acid transmembrane transporter activity 0.110419368036337 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [296-427] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AALAVFLIAA LGRGIMAMTS GMADKGETVN IAYVQWDSEV ASTHVIAEVL KNEGYHVTLT  60
   61 PLDNAVMWQT VANGNADFST SAWLPVTHGQ QYQKYKSKLD DLGPNLKGTK LGLAVPKYMT 120
  121 DVNSIEDLSK QA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 4.31
Match: 2b4lA
Description: No description for 2b4lA was found.

Predicted Domain #3
Region A:
Residues: [428-575] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DQKITGIEPG AGIMAAAQKT LKEYHNLSSW ELVAASTGAM TTSLDQAIKK KDPIVVTAWS  60
   61 PHWMFAKYDL KYLKDPKEIF GSTENINTIA RKGLKKELPN VYKIIDKFHW TQKDMEAVML 120
  121 DINKGMSPEA AAKKWVEANK SKVSSWTK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.221849
Match: 2b4lA
Description: No description for 2b4lA was found.
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle