YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260070, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	290 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260070, gi|....

Description	E-value	Query Range	Subject Range
gi\|163943052, gi... - gi\|89205915\|ref\|ZP_01184480.1\| Putative agmatinase [Bacillus weihenstephanensis KBAB4], gi\|89156141\|... gi\|229065016, gi... - gi\|229065016\|ref\|ZP_04200314.1\| Agmatinase [Bacillus cereus AH603], gi\|228716317\|gb\|EEL68029.1\| Agma... gi\|228746754, gi... - gi\|229014534\|ref\|ZP_04171651.1\| Agmatinase [Bacillus mycoides DSM 2048], gi\|228746754\|gb\|EEL96640.1\|... gi\|229170074, gi... - gi\|229170074\|ref\|ZP_04297765.1\| Agmatinase [Bacillus cereus AH621], gi\|228613421\|gb\|EEK70555.1\| Agma...	2.0E-98	[1..290]	[1..290]
gi\|228936654, gi... - gi\|228936654\|ref\|ZP_04099447.1\| Agmatinase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1]... gi\|228930375, gi... - gi\|228930375\|ref\|ZP_04093376.1\| Agmatinase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1... gi\|196036498, gi... - gi\|196036498\|ref\|ZP_03103893.1\| putative agmatinase [Bacillus cereus W], gi\|195990831\|gb\|EDX54804.1\|... gi\|228658578, gi... - gi\|229124870\|ref\|ZP_04254047.1\| Agmatinase [Bacillus cereus 95/8201], gi\|228658578\|gb\|EEL14241.1\| Ag... gi\|52140195, gi\|... - gi\|52140195\|ref\|YP_086636.1\| agmatinase (agmatine ureohydrolase) [Bacillus cereus E33L], gi\|51973664... gi\|228949093, gi... - gi\|228949093\|ref\|ZP_04111363.1\| Agmatinase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1], gi\|...	2.0E-98	[1..290]	[1..290]
gi\|228903846, gi... - gi\|228903846\|ref\|ZP_04067961.1\| Agmatinase [Bacillus thuringiensis IBL 4222], gi\|228855755\|gb\|EEN003... gi\|228911208, gi... - gi\|228911208\|ref\|ZP_04075013.1\| Agmatinase [Bacillus thuringiensis IBL 200], gi\|228848384\|gb\|EEM9323... gi\|228817108, gi... - gi\|228942515\|ref\|ZP_04105050.1\| Agmatinase [Bacillus thuringiensis serovar berliner ATCC 10792], gi\|... gi\|228803987, gi... - gi\|228955618\|ref\|ZP_04117616.1\| Agmatinase [Bacillus thuringiensis serovar kurstaki str. T03a001], g... gi\|228975448, gi... - gi\|228975448\|ref\|ZP_04136003.1\| Agmatinase [Bacillus thuringiensis serovar thuringiensis str. T01001... gi\|228982081, gi... - gi\|228982081\|ref\|ZP_04142373.1\| Agmatinase [Bacillus thuringiensis Bt407], gi\|228777619\|gb\|EEM25894.... gi\|228988595, gi... - gi\|228988595\|ref\|ZP_04148681.1\| Agmatinase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1], g... gi\|74493969, gi\|... - gi\|75758535\|ref\|ZP_00738655.1\| Agmatinase [Bacillus thuringiensis serovar israelensis ATCC 35646], g... gi\|228722250, gi... - gi\|229051039\|ref\|ZP_04194586.1\| Agmatinase [Bacillus cereus AH676], gi\|228722250\|gb\|EEL73648.1\| Agma... gi\|228710327, gi... - gi\|229072836\|ref\|ZP_04206035.1\| Agmatinase [Bacillus cereus F65185], gi\|228710327\|gb\|EEL62302.1\| Agm... gi\|229082581, gi... - gi\|229082581\|ref\|ZP_04215044.1\| Agmatinase [Bacillus cereus Rock4-2], gi\|228701013\|gb\|EEL53536.1\| Ag... gi\|229112781, gi... - gi\|229112781\|ref\|ZP_04242313.1\| Agmatinase [Bacillus cereus Rock1-15], gi\|228670615\|gb\|EEL25927.1\| A... gi\|228652955, gi... - gi\|229130616\|ref\|ZP_04259572.1\| Agmatinase [Bacillus cereus BDRD-Cer4], gi\|228652955\|gb\|EEL08837.1\| ... gi\|229142111, gi... - gi\|229142111\|ref\|ZP_04270636.1\| Agmatinase [Bacillus cereus BDRD-ST26], gi\|228641400\|gb\|EEK97706.1\| ... gi\|228635558, gi... - gi\|229147908\|ref\|ZP_04276249.1\| Agmatinase [Bacillus cereus BDRD-ST24], gi\|228635558\|gb\|EEK92047.1\| ... gi\|228630134, gi... - gi\|229153530\|ref\|ZP_04281708.1\| Agmatinase [Bacillus cereus m1550], gi\|228630134\|gb\|EEK86785.1\| Agma... gi\|228624540, gi... - gi\|229158929\|ref\|ZP_04286986.1\| Agmatinase [Bacillus cereus ATCC 4342], gi\|228624540\|gb\|EEK81310.1\| ... SPEB_BACCR - Agmatinase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NRR... gi\|229164315, gi... - gi\|229164315\|ref\|ZP_04292246.1\| Agmatinase [Bacillus cereus R309803], gi\|228619158\|gb\|EEK76053.1\| Ag... gi\|228601812, gi... - gi\|229181616\|ref\|ZP_04308941.1\| Agmatinase [Bacillus cereus 172560W], gi\|228601812\|gb\|EEK59308.1\| Ag... gi\|228589774, gi... - gi\|229193621\|ref\|ZP_04320564.1\| Agmatinase [Bacillus cereus ATCC 10876], gi\|228589774\|gb\|EEK47650.1\|... gi\|222098840, gi... - gi\|222098840\|ref\|YP_002532898.1\| agmatinase (agmatine ureohydrolase) [Bacillus cereus Q1], gi\|221242... gi\|218233190, gi... - gi\|218233190\|ref\|YP_002370145.1\| putative agmatinase [Bacillus cereus B4264], gi\|218161147\|gb\|ACK611... gi\|218544821, gi... - gi\|218900495\|ref\|YP_002448906.1\| putative agmatinase [Bacillus cereus G9842], gi\|218544821\|gb\|ACK972... gi\|47570355, gi\|... - gi\|47570355\|ref\|ZP_00240998.1\| agmatinase, putative [Bacillus cereus G9241], gi\|47552970\|gb\|EAL11378... gi\|42784543, gi\|... - gi\|42784543\|ref\|NP_981790.1\| agmatinase, putative [Bacillus cereus ATCC 10987], gi\|42740475\|gb\|AAS44... gi\|206975906, gi... - gi\|206975906\|ref\|ZP_03236817.1\| putative agmatinase [Bacillus cereus H3081.97], gi\|206746000\|gb\|EDZ5... gi\|217962858, gi... - gi\|217962858\|ref\|YP_002341436.1\| putative agmatinase [Bacillus cereus AH187], gi\|217064814\|gb\|ACJ790... gi\|206970029, gi... - gi\|206970029\|ref\|ZP_03230982.1\| agmatinase [Bacillus cereus AH1134], gi\|206734606\|gb\|EDZ51775.1\| agm...	4.0E-98	[1..290]	[1..290]
gi\|89201452, gi\|... - gi\|89201452\|ref\|ZP_01180192.1\| Putative agmatinase [Bacillus cereus subsp. cytotoxis NVH 391-98], gi...	2.0E-97	[1..290]	[1..290]
SPEB_BACSU - Agmatinase OS=Bacillus subtilis GN=speB PE=1 SV=1 SPEB_BACSU - Agmatinase OS=Bacillus subtilis (strain 168) GN=speB PE=1 SV=1 gi\|221316038 - gi\|221316038\|ref\|ZP_03597843.1\| agmatinase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi\|221320949 - gi\|221320949\|ref\|ZP_03602243.1\| agmatinase [Bacillus subtilis subsp. subtilis str. JH642] gi\|221325234 - gi\|221325234\|ref\|ZP_03606528.1\| agmatinase [Bacillus subtilis subsp. subtilis str. SMY]	5.0E-97	[1..290]	[1..290]
gi\|52005471, gi\|... - gi\|52787651\|ref\|YP_093480.1\| hypothetical protein BLi03973 [Bacillus licheniformis ATCC 14580], gi\|5...	2.0E-96	[1..290]	[1..290]
gi\|68055975, gi\|... - gi\|68055975\|ref\|ZP_00540112.1\| Putative agmatinase [Exiguobacterium sibiricum 255-15], gi\|68007412\|g...	2.0E-93	[1..290]	[1..290]
gi\|56381781, gi\|... - gi\|56421939\|ref\|YP_149257.1\| agmatinase [Geobacillus kaustophilus HTA426], gi\|56381781\|dbj\|BAD77689....	5.0E-93	[1..289]	[1..289]
gi\|56965655, gi\|... - gi\|56965655\|ref\|YP_177389.1\| agmatinase [Bacillus clausii KSM-K16], gi\|56911901\|dbj\|BAD66428.1\| agma...	5.0E-92	[1..289]	[1..289]
SPEB_BACHD - Agmatinase OS=Bacillus halodurans GN=speB PE=3 SV=2 SPEB_BACHD - Agmatinase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) G...	1.0E-91	[1..289]	[1..289]

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Predicted Domain #1

Region A:
Residues: [1-290]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFDEAYSGK VFIKSHPSFE ESEVVIYGMP MDWTVSYRPG SRFGPARIRE VSIGLEEYSP  60
   61 YLDRELEEVK YFDAGDIPLP FGNAQRSLDM IEEYVSKLLD AGKFPLGLGG EHLVSWPIFK 120
  121 AMAKKYPDLA IIHMDAHTDL RESYEGEPLS HSTPIRKVCD LIGPENVYSF GIRSGMKEEF 180
  181 EWAKEVGMNL YKFDVLEPLK EVLPKLEGRP VYVTIDIDVL DPAHAPGTGT LEAGGITSKE 240
  241 LLDSIVAIAN SNINVVGADL VEVAPVYDHS DQTPVAASKF VREMLLGWVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	75.39794
Match:	1gq6A
Description:	Proclavaminate amidino hydrolase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
agmatinase activity	3.73238467801147	bayes_pls_golite062009
hydrolase activity	2.11707868768295	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.72243397396987	bayes_pls_golite062009
catalytic activity	1.68836803454021	bayes_pls_golite062009
arginase activity	1.40830447978229	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines	1.01223037319069	bayes_pls_golite062009
protein deacetylase activity	0.94998716163927	bayes_pls_golite062009
histone deacetylase activity	0.905952455299869	bayes_pls_golite062009
deacetylase activity	0.275968925511837	bayes_pls_golite062009
transcription factor binding	0.12258695349961	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	0.0917282383800223	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: