YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259223, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	306 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259223, gi|....

Description	E-value	Query Range	Subject Range
gi\|68526086, gi\|... - gi\|94310351\|ref\|YP_583561.1\| binding-protein-dependent transport systems inner membrane component [R...	2.0E-69	[1..305]	[1..305]
gi\|89346610, gi\|... - gi\|89901873\|ref\|YP_524344.1\| binding-protein-dependent transport systems inner membrane component [R...	8.0E-69	[1..305]	[1..305]
gi\|73541614, gi\|... - gi\|73541614\|ref\|YP_296134.1\| binding-protein dependent transport system inner membrane protein [Rals...	9.0E-69	[1..305]	[1..305]
gi\|51893791, gi\|... - gi\|51893791\|ref\|YP_076482.1\| oligopeptide ABC transporter permease protein [Symbiobacterium thermoph...	1.0E-68	[2..306]	[1..308]
gi\|33574213 - gi\|33574213\|emb\|CAE38545.1\| putative binding-protein-dependent transport permease [Bordetella parape... gi\|33597784 - gi\|33597784\|ref\|NP_885427.1\| putative binding-protein-dependent transport permease [Bordetella parap... gi\|33602686, gi\|... - gi\|33602686\|ref\|NP_890246.1\| putative binding-protein-dependent transport permease [Bordetella bronc... gi\|33572739, gi\|... - gi\|33593383\|ref\|NP_881027.1\| putative binding-protein-dependent transport permease [Bordetella pertu...	1.0E-68	[1..305]	[1..305]
gi\|17428396 - gi\|17428396\|emb\|CAD15083.1\| probable transmembrane abc transporter protein [Ralstonia solanacearum G... gi\|17546100 - gi\|17546100\|ref\|NP_519502.1\| transmembrane ABC transporter protein [Ralstonia solanacearum GMI1000]	1.0E-68	[1..305]	[1..305]
gi\|254792025, gi... - gi\|254792025\|ref\|YP_003076862.1\| putative transport system permease protein [Escherichia coli O157:H... GSIC_ECO57 - Glutathione transport system permease protein GsiC OS=Escherichia coli O157:H7 GN=gsiC PE=3 SV=1 gi\|208732236, gi... - gi\|208815588\|ref\|ZP_03256767.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli... gi\|25296838, gi\|... - pir\|\|F90742 probable transport system permease protein ECs0910 [imported] - Escherichia coli (strain... gi\|208738100, gi... - gi\|208822615\|ref\|ZP_03262934.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli... gi\|209399916, gi... - gi\|209399916\|ref\|YP_002269498.1\| glutathione ABC transporter, permease protein GsiC [Escherichia col... gi\|15800581, gi\|... - gi\|15800581\|ref\|NP_286595.1\| putative transport system permease protein [Escherichia coli O157:H7 ED... gi\|217325168, gi... - gi\|217325168\|ref\|ZP_03441252.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli... gi\|189372981, gi... - gi\|189372981\|gb\|EDU91397.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli O15... gi\|189377757, gi... - gi\|189377757\|gb\|EDU96173.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli O15... gi\|195936874 - gi\|195936874\|ref\|ZP_03082256.1\| putative transport system permease protein [Escherichia coli O157:H7... gi\|208809102, gi... - gi\|208809102\|ref\|ZP_03251439.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli... gi\|189366486, gi... - gi\|189366486\|gb\|EDU84902.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli O15... gi\|13360369, gi\|... - gi\|15830164\|ref\|NP_308937.1\| putative transport system permease protein [Escherichia coli O157:H7 st... gi\|168767339, gi... - gi\|189363341\|gb\|EDU81760.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli O15... gi\|168776370, gi... - gi\|187768191\|gb\|EDU32035.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli O15... gi\|189002863, gi... - gi\|189002863\|gb\|EDU71849.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli O15... gi\|168750013, gi... - gi\|188015728\|gb\|EDU53850.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli O15... gi\|189356282, gi... - gi\|189356282\|gb\|EDU74701.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli O15...	2.0E-68	[1..305]	[1..305]
gi\|83748829, gi\|... - gi\|83748829\|ref\|ZP_00945842.1\| DppB [Ralstonia solanacearum UW551], gi\|83724521\|gb\|EAP71686.1\| DppB ...	2.0E-68	[1..305]	[1..305]
YLIC_ECOLI, GSIC... - (P75798) Inner membrane ABC transporter permease protein yliC, Glutathione permease protein gsiC - E... gi\|170519659, gi... - gi\|170681941\|ref\|YP_001742936.1\| glutathione ABC transporter, permease protein GsiC [Escherichia col... gi\|170080490, gi... - gi\|170080490\|ref\|YP_001729810.1\| permease component of a glutathione transporter [Escherichia coli s... gi\|218360185, gi... - gi\|218553417\|ref\|YP_002386330.1\| putative peptide transporter permease subunit: membrane component o... gi\|209911339, gi... - gi\|209918080\|ref\|YP_002292164.1\| putative oligopeptide ABC transporter permease component [Escherich... gi\|218688614, gi... - gi\|218688614\|ref\|YP_002396826.1\| putative peptide transporter permease subunit: membrane component o... gi\|218364504, gi... - gi\|218557735\|ref\|YP_002390648.1\| putative peptide transporter permease subunit: membrane component o... gi\|218369190, gi... - gi\|218699204\|ref\|YP_002406833.1\| putative peptide transporter permease subunit: membrane component o... gi\|218351037, gi... - gi\|218694305\|ref\|YP_002401972.1\| putative peptide transporter permease subunit: membrane component o... gi\|170020814, gi... - gi\|170020814\|ref\|YP_001725768.1\| binding-protein-dependent transport systems inner membrane componen... gi\|218704253, gi... - gi\|218704253\|ref\|YP_002411772.1\| putative peptide transporter permease subunit: membrane component o... gi\|75257571, gi\|... - gi\|75257571\|ref\|ZP_00729068.1\| COG0601: ABC-type dipeptide/oligopeptide/nickel transport systems, pe... GSIC_ECOUT - Glutathione transport system permease protein GsiC OS=Escherichia coli (strain UTI89 / UPEC) GN=gsiC... gi\|75512836, gi\|... - gi\|75512836\|ref\|ZP_00735328.1\| COG0601: ABC-type dipeptide/oligopeptide/nickel transport systems, pe... GSIC_ECOL5 - Glutathione transport system permease protein GsiC OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC... GSIC_SHIDS - Glutathione transport system permease protein GsiC OS=Shigella dysenteriae serotype 1 (strain Sd197)... gi\|4062408, gi\|8... - gi\|89107682\|ref\|AP_001462.1\| predicted peptide transporter subunit [Escherichia coli str. K-12 subst... gi\|83586135, gi\|... - gi\|83586135\|ref\|ZP_00924772.1\| COG0601: ABC-type dipeptide/oligopeptide/nickel transport systems, pe... gi\|157158547, gi... - gi\|75189872\|ref\|ZP_00703139.1\| COG0601: ABC-type dipeptide/oligopeptide/nickel transport systems, pe... gi\|75194982, gi\|... - gi\|75194982\|ref\|ZP_00705052.1\| COG0601: ABC-type dipeptide/oligopeptide/nickel transport systems, pe... gi\|194413733, gi... - gi\|75210573\|ref\|ZP_00710721.1\| COG0601: ABC-type dipeptide/oligopeptide/nickel transport systems, pe... gi\|190903817, gi... - gi\|75230679\|ref\|ZP_00717150.1\| COG0601: ABC-type dipeptide/oligopeptide/nickel transport systems, pe... EG13474 - glutathione ABC transporter permease / Glutathione ABC transporter permease gi\|192957360, gi... - gi\|75236112\|ref\|ZP_00720236.1\| COG0601: ABC-type dipeptide/oligopeptide/nickel transport systems, pe... gi\|190905982, gi... - gi\|75238164\|ref\|ZP_00722168.1\| COG0601: ABC-type dipeptide/oligopeptide/nickel transport systems, pe... gi\|227884205, gi... - gi\|227884205\|ref\|ZP_04002010.1\| peptide transporter subunit: membrane component of ABC superfamily p... gi\|226898416, gi... - gi\|237707206\|ref\|ZP_04537687.1\| glutathione transport system permease gsiC [Escherichia sp. 3_2_53FA... gi\|238900090, gi... - gi\|238900090\|ref\|YP_002925886.1\| putative peptide transporter subunit: membrane component of ABC sup... gi\|251784350, gi... - gi\|251784350\|ref\|YP_002998654.1\| hypothetical protein B21_00815 [Escherichia coli BL21], gi\|24237662... gi\|253325210, gi... - gi\|254287722\|ref\|YP_003053470.1\| predicted peptide transporter subunit: membrane component of ABC su... gi\|253972809, gi... - gi\|254160908\|ref\|YP_003044016.1\| predicted peptide transporter subunit: membrane component of ABC su... GSIC_ECOK1 - Glutathione transport system permease protein GsiC OS=Escherichia coli O1:K1 / APEC GN=gsiC PE=3 SV=... gi\|124501392, gi... - gi\|124527047\|ref\|ZP_01698884.1\| binding-protein-dependent transport systems inner membrane component... EG13474 - glutathione ABC transporter permease / Glutathione ABC transporter permease	2.0E-68	[1..305]	[1..305]
GSIC_SHIF8 - Glutathione transport system permease protein GsiC OS=Shigella flexneri serotype 5b (strain 8401) GN...	3.0E-68	[1..305]	[1..305]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLMFIFRRIL QLIPVLFGVV FVVFLIRQMV PGDPALLIAG EGASKETVEQ IRHQLGLDKP  60
   61 FIMQYFSYIG NILQGDFGVS IRSNR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [86-306]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVLDEVLIRL PITIELALCS IVITVVIGMI AGIISATKQY SWTDVSIMII ALLGVSLPSF  60
   61 WFGLMLIFYF SVQIQIFPVS GWGTWMHMVL PALTLGASGA AIVARMTRSS MLDVIRQDYI 120
  121 RTARAKGVKE RVVIYKHALR NALIPVITVV GLQFGALLGG TVLVESVFAI NGLGRLIVDA 180
  181 IRMRDLPMLQ GGVLIASVIF VLVNLIVDIL YRYFNKRIEL N

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.27
Match:	2onkC
Description:	No description for 2onkC was found.

Predicted functions:

Term	Confidence	Notes
ATPase activity, coupled to transmembrane movement of substances	7.61517440483825	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	7.61475955752567	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	7.61475955752567	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	7.60261285611608	bayes_pls_golite062009
primary active transmembrane transporter activity	7.59280303111267	bayes_pls_golite062009
active transmembrane transporter activity	7.51217805691059	bayes_pls_golite062009
ATPase activity, coupled	6.95724531600418	bayes_pls_golite062009
ATPase activity	6.62620720611918	bayes_pls_golite062009
nucleoside-triphosphatase activity	6.31173441402571	bayes_pls_golite062009
pyrophosphatase activity	6.23822548232138	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	6.21828378422716	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	6.21791205758921	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	5.46058403247103	bayes_pls_golite062009
ion transmembrane transporter activity	4.84048533553771	bayes_pls_golite062009
hydrolase activity	4.5940497987178	bayes_pls_golite062009
cation transmembrane transporter activity	4.17977204081224	bayes_pls_golite062009
transporter activity	4.16850252614298	bayes_pls_golite062009
transmembrane transporter activity	4.07281957844021	bayes_pls_golite062009
substrate-specific transporter activity	3.61142533583701	bayes_pls_golite062009
metal ion transmembrane transporter activity	2.9260252024097	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	2.85525880225875	bayes_pls_golite062009
iron ion transmembrane transporter activity	2.46453467908178	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	2.19359047382598	bayes_pls_golite062009
sugar transmembrane transporter activity	2.147054904918	bayes_pls_golite062009
sulfate transmembrane-transporting ATPase activity	2.12981939421008	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	1.90343616526346	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	1.6718548573993	bayes_pls_golite062009
oligosaccharide-transporting ATPase activity	1.62768691451517	bayes_pls_golite062009
oligosaccharide transmembrane transporter activity	1.62768691451517	bayes_pls_golite062009
maltose-transporting ATPase activity	1.62768691451517	bayes_pls_golite062009
alpha-glucoside transmembrane transporter activity	1.5877861023737	bayes_pls_golite062009
maltose transmembrane transporter activity	1.5877861023737	bayes_pls_golite062009
disaccharide transmembrane transporter activity	1.5877861023737	bayes_pls_golite062009
glucoside transmembrane transporter activity	1.54998466398412	bayes_pls_golite062009
anion transmembrane transporter activity	1.53656434391799	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	1.4745579365074	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	0.737817335114385	bayes_pls_golite062009
secondary active transmembrane transporter activity	0.634824157502542	bayes_pls_golite062009
catalytic activity	0.350058049038907	bayes_pls_golite062009
sulfate transmembrane transporter activity	0.314028059232496	bayes_pls_golite062009
solute:cation symporter activity	0.0914244193736007	bayes_pls_golite062009
symporter activity	0.0914244193736007	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: