YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263871, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	801 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263871, gi|....

Description	E-value	Query Range	Subject Range
gi\|163941606, gi... - gi\|89208216\|ref\|ZP_01186733.1\| Primosomal protein n [Bacillus weihenstephanensis KBAB4], gi\|89153851...	0.0	[1..801]	[1..801]
gi\|51975091, gi\|... - gi\|52141622\|ref\|YP_085209.1\| primosome assembly protein PriA [Bacillus cereus E33L], gi\|51975091\|gb\|...	0.0	[1..801]	[1..801]
gi\|225790378, gi... - gi\|225865849\|ref\|YP_002751227.1\| primosomal protein N' [Bacillus cereus 03BB102], gi\|225790378\|gb\|AC... gi\|218904998, gi... - gi\|218904998\|ref\|YP_002452832.1\| primosomal protein N` [Bacillus cereus AH820], gi\|218536635\|gb\|ACK8... gi\|196021755, gi... - gi\|196047447\|ref\|ZP_03114659.1\| primosomal protein N` [Bacillus cereus 03BB108], gi\|196021755\|gb\|EDX... gi\|49330461, gi\|... - gi\|49478905\|ref\|YP_037929.1\| primosome assembly protein PriA [Bacillus thuringiensis serovar konkuki...	0.0	[1..801]	[1..801]
gi\|65321195, gi\|... - gi\|65321195\|ref\|ZP_00394154.1\| COG1198: Primosomal protein N' (replication factor Y) - superfamily I...	0.0	[1..801]	[1..801]
gi\|42738887, gi\|... - gi\|42782960\|ref\|NP_980207.1\| primosome assembly protein PriA [Bacillus cereus ATCC 10987], gi\|427388...	0.0	[1..801]	[1..801]
gi\|30021956, gi\|... - gi\|30021956\|ref\|NP_833587.1\| primosome assembly protein PriA [Bacillus cereus ATCC 14579], gi\|298975...	0.0	[1..801]	[1..801]
gi\|47569495, gi\|... - gi\|47569495\|ref\|ZP_00240175.1\| primosomal protein N` [Bacillus cereus G9241], gi\|47553824\|gb\|EAL1219...	0.0	[1..801]	[1..801]
gi\|152976234, gi... - gi\|89203168\|ref\|ZP_01181862.1\| Primosomal protein n [Bacillus cereus subsp. cytotoxis NVH 391-98], g...	0.0	[1..801]	[1..801]
PRIA_BACSU - Primosomal protein N' OS=Bacillus subtilis (strain 168) GN=priA PE=3 SV=2 gi\|221318695 - gi\|221318695\|ref\|ZP_03599989.1\| primosome assembly protein PriA [Bacillus subtilis subsp. subtilis s... gi\|221322966 - gi\|221322966\|ref\|ZP_03604260.1\| primosome assembly protein PriA [Bacillus subtilis subsp. subtilis s... PRIA_BACSU - Primosomal protein N' OS=Bacillus subtilis GN=priA PE=3 SV=2 gi\|221313771 - gi\|221313771\|ref\|ZP_03595576.1\| primosome assembly protein PriA [Bacillus subtilis subsp. subtilis s...	0.0	[1..801]	[1..805]
gi\|89086669, gi\|... - gi\|89098707\|ref\|ZP_01171589.1\| primosome assembly protein PriA [Bacillus sp. NRRL B-14911], gi\|89086...	0.0	[1..801]	[1..802]

Back

Predicted Domain #1

Region A:
Residues: [1-742]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFASVIVDV PARQTDRPFD YIIPKKWEDI VQTGMRVVVP FGPRKLQGFI IGIKNSVEVE  60
   61 SKKLKTIHEI LDVTPVLNEE LLKLGYWLTS ETLCYMISAF QVMLPTAIKA TYKKRLQLRK 120
  121 QEEVAPELLF LFQEKEAIDW EAIETQPHLY RTIQQEIKHG TIEVVYQVKD KVQKKKQRVV 180
  181 QPELPEDKLE LAAFELKSKK QQDVLYYFVE NYKSVPLKVI TEELQITDAP IKALVKKGLI 240
  241 SEKYVEVYRN PYDDEDFEQT KPFPLTEEQK QVITPILSSI TNETYNPFLL YGVTGSGKTE 300
  301 VYLQSIAAVL EKGKEAIVLV PEIALTPQMV DRFKGRFGSQ VAVLHSALSV GEKYDEWRKI 360
  361 LRKEVKVVVG ARSAVFAPFE NLGIIIIDEE HESSYKQEDN PRYHARDVAV WRGQYHKCPI 420
  421 VLGSATPTLE SFARAKKGVY ELLTMEKRMN EQALPTVEIV DMREELRDGN RSMFSKALHE 480
  481 KIADRLEKKE QMVLFLNRRG HSTFVMCRDC GYVVQCPHCD ISLTYHKMNH RLKCHYCSYE 540
  541 ENMPTACPAC QSTYIRFFGT GTQKVEEEIT KLFPEARVIR MDVDTTSRKG MHEKLLKAFG 600
  601 EEKADILLGT QMIAKGLDFP KVTLVGVLTA DTMLHLPDFR ASEKTYQLLT QVSGRAGRHE 660
  661 LPGEVIIQTY TPEHYSIELA KNQQYDVFFD QEMQMRRTRQ YPPYYYVVLV TVSHPELLKA 720
  721 VQVTEKIVGH LRSHCSQQTM VL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.39794
Match:	2eyqA
Description:	Crystal structure of Escherichia coli transcription-repair coupling factor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
DNA clamp loader activity	4.91429252297969	bayes_pls_golite062009
protein-DNA loading ATPase activity	4.80695929076807	bayes_pls_golite062009
binding	3.20817609308002	bayes_pls_golite062009
DNA-dependent ATPase activity	2.72462789867829	bayes_pls_golite062009
DNA helicase activity	2.2817164193758	bayes_pls_golite062009
nucleic acid binding	2.2502397577006	bayes_pls_golite062009
transcription regulator activity	2.19474222771129	bayes_pls_golite062009
pyrophosphatase activity	2.13284212711072	bayes_pls_golite062009
DNA binding	2.03222535159295	bayes_pls_golite062009
ATP-dependent DNA helicase activity	1.88455339138556	bayes_pls_golite062009
helicase activity	1.70242731830224	bayes_pls_golite062009
purine NTP-dependent helicase activity	1.19311444180077	bayes_pls_golite062009
ATP-dependent helicase activity	1.19311444180077	bayes_pls_golite062009
catalytic activity	1.00104173493322	bayes_pls_golite062009
DNA-directed DNA polymerase activity	0.971476020912368	bayes_pls_golite062009
DNA polymerase activity	0.928091843881235	bayes_pls_golite062009
transcription factor activity	0.802855430913287	bayes_pls_golite062009
structure-specific DNA binding	0.782430219754236	bayes_pls_golite062009
double-stranded DNA binding	0.6071273686445	bayes_pls_golite062009
RNA helicase activity	0.18426050934025	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.147579541298736	bayes_pls_golite062009
RNA-dependent ATPase activity	0.14606996093053	bayes_pls_golite062009
ATP-dependent RNA helicase activity	0.13050483816765	bayes_pls_golite062009
nucleotide binding	0.114848452385726	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.113504049290503	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.111293884322157	bayes_pls_golite062009
purine nucleotide binding	0.10713474095071	bayes_pls_golite062009
purine ribonucleotide binding	0.0916519414118148	bayes_pls_golite062009
ribonucleotide binding	0.0915913646217636	bayes_pls_golite062009
structural constituent of ribosome	0.089234257580272	bayes_pls_golite062009
3'-5' DNA helicase activity	0.0769112340058804	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [743-801]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPVASAIPRI KDRYRYQCMI KYKREPNLKN VLKMVNEHYQ AEMQKELQIS IDFNPTMLM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.69897
Match:	1t5lA
Description:	Crystal structure of the DNA repair protein UvrB point mutant Y96A revealing a novel fold for domain 2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: