YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258453, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	413 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258453, gi|....

Description	E-value	Query Range	Subject Range
gi\|56379648, gi\|... - gi\|56419806\|ref\|YP_147124.1\| processing protease [Geobacillus kaustophilus HTA426], gi\|56379648\|dbj\|...	0.0	[1..412]	[14..425]
gi\|73981963 - gi\|73981963\|ref\|XP_533104.2\| PREDICTED: similar to Mitochondrial processing peptidase beta subunit, ...	0.0	[3..413]	[83..504]
gi\|146273710, gi... - gi\|98660542\|dbj\|GAA02255.1\| unnamed protein product [Pelotomaculum thermopropionicum SI], gi\|1476776...	0.0	[1..403]	[1..405]
gi\|89206977, gi\|... - gi\|89206977\|ref\|ZP_01185527.1\| Peptidase M16, C-terminal:Peptidase M16, N-terminal [Bacillus weihens...	0.0	[1..413]	[1..413]
gi\|49329940, gi\|... - gi\|49478384\|ref\|YP_037866.1\| zinc protease [Bacillus thuringiensis serovar konkukian str. 97-27], gi... gi\|217961225, gi... - gi\|217961225\|ref\|YP_002339793.1\| zinc protease, insulinase family [Bacillus cereus AH187], gi\|217065... gi\|206978178, gi... - gi\|206978178\|ref\|ZP_03239059.1\| zinc protease, insulinase family [Bacillus cereus H3081.97], gi\|2067... gi\|196024578, gi... - gi\|196044543\|ref\|ZP_03111778.1\| zinc protease, insulinase family [Bacillus cereus 03BB108], gi\|19602... gi\|196042172, gi... - gi\|196042172\|ref\|ZP_03109455.1\| zinc protease, insulinase family [Bacillus cereus NVH0597-99], gi\|19... gi\|225789364, gi... - gi\|225865784\|ref\|YP_002751162.1\| zinc protease, insulinase family [Bacillus cereus 03BB102], gi\|2257...	0.0	[1..413]	[1..413]
gi\|42738820, gi\|... - gi\|42782893\|ref\|NP_980140.1\| zinc protease [Bacillus cereus ATCC 10987], gi\|42738820\|gb\|AAS42748.1\| ...	0.0	[1..413]	[1..413]
gi\|51975153, gi\|... - gi\|52141684\|ref\|YP_085146.1\| zinc protease [Bacillus cereus E33L], gi\|51975153\|gb\|AAU16703.1\| zinc p...	0.0	[1..413]	[1..413]
gi\|47554244, gi\|... - gi\|47569082\|ref\|ZP_00239771.1\| peptidase, M16 family [Bacillus cereus G9241], gi\|47554244\|gb\|EAL1260...	0.0	[1..413]	[20..432]
gi\|113931314, gi... - gi\|113931314\|ref\|NP_001039103.1\| peptidase (mitochondrial processing) beta [Xenopus (Silurana) tropi...	0.0	[3..413]	[51..470]
gi\|29897450, gi\|... - gi\|30021894\|ref\|NP_833525.1\| Zinc protease [Bacillus cereus ATCC 14579], gi\|29897450\|gb\|AAP10726.1\| ...	0.0	[1..413]	[20..432]

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Predicted Domain #1

Region A:
Residues: [1-413]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKKYTCKNG VRIVMENIPT VRSVAIGIWI HAGSRNENEK NNGISHFLEH MFFKGTETRS  60
   61 AREIAESFDS IGGQVNAFTS KEYTCYYAKV LDEHAKYALD VLADMFFNST FDEEELKKEK 120
  121 NVVCEEIKMY EDAPDDIVHD MLTKATYETH PLGYPILGTE ETLNTFTGDT LRQYIKDHYT 180
  181 PENVVVSIAG NIDEAFLQTV EQYFGSYEGT TNREQVHSPI FHFNKVARKK ETEQAHLCLG 240
  241 YKGLQMGHED IYNLIVLNNV LGGSMSSRLF QEVREQRGLA YSVFSYHSSY EDTGMLTLYG 300
  301 GTGSQQLDTL YETMQETLET LKNTGITEKE LINSKEQLKG NLMLSLESTN SRMSRNGKNE 360
  361 LLLRKHRSLD EIIESVNTVT KENVDELIRN MFTDEFSAAL ISPDGKLPKG IKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	101.0
Match:	1be3A
Description:	Cytochrome bc1 core subunit 1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor	10.0305725791312	bayes_pls_golite062009
ubiquinol-cytochrome-c reductase activity	10.0305725791312	bayes_pls_golite062009
metallopeptidase activity	7.31794755224524	bayes_pls_golite062009
metalloendopeptidase activity	7.31174048559335	bayes_pls_golite062009
peptidase activity	7.05972470989638	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors	6.64269017601856	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	6.57226784092621	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	4.17510847735476	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	4.03221088799464	bayes_pls_golite062009
oxidoreductase activity	3.89224384280888	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	3.48526983761385	bayes_pls_golite062009
endopeptidase activity	3.25021389096625	bayes_pls_golite062009
hydrolase activity	2.79262298779436	bayes_pls_golite062009
transporter activity	1.55442313420533	bayes_pls_golite062009
binding	1.51460850438647	bayes_pls_golite062009
transmembrane transporter activity	1.40378628474509	bayes_pls_golite062009
catalytic activity	1.30647052031202	bayes_pls_golite062009
substrate-specific transporter activity	1.29599547747567	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	1.16717310870379	bayes_pls_golite062009
signal transducer activity	1.12122807250795	bayes_pls_golite062009
molecular transducer activity	1.12122807250795	bayes_pls_golite062009
ion transmembrane transporter activity	1.05022391589259	bayes_pls_golite062009
cation transmembrane transporter activity	0.961854978876222	bayes_pls_golite062009
protein binding	0.236143103582996	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.11486391789734	bayes_pls_golite062009
pyrophosphatase activity	0.077701103001661	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.0688257218639591	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.0662171656580391	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: