YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261638, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	934 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261638, gi|....

Description	E-value	Query Range	Subject Range
gi\|49477263, gi\|... - gi\|49477263\|ref\|YP_035758.1\| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsi... gi\|218902753, gi... - gi\|218902753\|ref\|YP_002450587.1\| putative DnaQ family exonuclease/DinG family helicase [Bacillus cer... gi\|196033564, gi... - gi\|196033564\|ref\|ZP_03100976.1\| putative DnaQ family exonuclease/DinG family helicase [Bacillus cere...	0.0	[1..934]	[1..934]
gi\|51977275, gi\|... - gi\|52143806\|ref\|YP_083022.1\| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsi...	0.0	[1..934]	[1..934]
gi\|21399459, gi\|... - gi\|65318908\|ref\|ZP_00391867.1\| COG1199: Rad3-related DNA helicases [Bacillus anthracis str. A2012], ...	0.0	[1..934]	[1..934]
gi\|42736665, gi\|... - gi\|42780745\|ref\|NP_977992.1\| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsi...	0.0	[1..934]	[1..934]
gi\|47556923, gi\|... - gi\|47566006\|ref\|ZP_00237044.1\| DnaQ family exonuclease/DinG family helicase, putative [Bacillus cere...	0.0	[1..934]	[1..934]
gi\|89204921, gi\|... - gi\|89204921\|ref\|ZP_01183496.1\| DNA polymerase III, epsilon subunit:DnaQ exonuclease/DinG helicase [B...	0.0	[1..915]	[1..915]
gi\|75760399, gi\|... - gi\|75760399\|ref\|ZP_00740443.1\| ATP-dependent helicase, DinG family [Bacillus thuringiensis serovar i...	0.0	[1..915]	[1..915]
gi\|152975065, gi... - gi\|89201000\|ref\|ZP_01179748.1\| DNA polymerase III, epsilon subunit:DnaQ exonuclease/DinG helicase [B...	0.0	[1..928]	[1..929]
gi\|25486645 - pir\|\|C83861 ATP-dependent DNA helicase dinG [imported] - Bacillus halodurans (strain C-125) gi\|15614254, gi\|... - gi\|15614254\|ref\|NP_242557.1\| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsi...	0.0	[1..932]	[1..942]
DING_BACSU - Probable ATP-dependent helicase dinG homolog OS=Bacillus subtilis GN=dinG PE=3 SV=1 DING_BACSU - Probable ATP-dependent helicase DinG homolog OS=Bacillus subtilis (strain 168) GN=dinG PE=3 SV=1 gi\|221319400 - gi\|221319400\|ref\|ZP_03600694.1\| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit e... gi\|221314478 - gi\|221314478\|ref\|ZP_03596283.1\| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit e... gi\|221323676 - gi\|221323676\|ref\|ZP_03604970.1\| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit e...	0.0	[2..924]	[3..922]

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Predicted Domain #1

Region A:
Residues: [1-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKRYVVVDL ETTGNSWKDG KDKITQIAAV VVEDGEILEI FSSFINPKRE IPPFITELTG  60
   61 IDESMVKQAP LFEDVAPMVV ELLQGAAFVA HNVHFDWNFL TEELRQAGYT EIHCPKVDTV 120
  121 ELAQILLPTA DSYKLRDLAK QHELEHDQPH RADSDALATA ELFLQFLNEI EKLPLVTLQS 180
  181 LYELSDVFQS DIADVLSENI LKKMMHGKKV AEEYEVYRNI ALRKRNYSLN LS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.09691
Match:	2guiA
Description:	No description for 2guiA was found.

Predicted functions:

Term	Confidence	Notes
exonuclease activity	1.80771920515619	bayes_pls_golite062009
nuclease activity	1.80465910244067	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	1.57563059592056	bayes_pls_golite062009
hydrolase activity	1.3554844973302	bayes_pls_golite062009
catalytic activity	1.25233849524628	bayes_pls_golite062009
exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	0.776144771215545	bayes_pls_golite062009
deoxyribonuclease activity	0.745159527918618	bayes_pls_golite062009
ribonuclease activity	0.567315548679559	bayes_pls_golite062009
DNA polymerase activity	0.292394942678782	bayes_pls_golite062009
endonuclease activity	0.164428265680495	bayes_pls_golite062009
DNA-directed DNA polymerase activity	0.135239303066181	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [233-934]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETCSSKFDAF LHKTIDKLAL NMPKFEKRES QQIMMKEIYT ALRDSRFSLI EAGTGTGKTL  60
   61 AYLLPSIYFA KKKEEPVIIS TQTVQLQQQI LEKEIPLLQK IMPFSFEIAL LKGRKHYLCL 120
  121 HKFEYALQEE EKNYDMALTK AKILVWLLQT ETGDRDELNI PEGGKLLWNR ICSDVHSPGG 180
  181 MQSNWFSRCF YQRAKNKALF ADIVITNHAL LFQDFSSEEP LLASCEHIIF DEAHHIEEAA 240
  241 SRTLGEQFSC MYFQLVLSRL GTLETDDVLS KVYKMMKKSE QASRSTFRMV SHSLKELKFD 300
  301 ADELFQMLRA FIFKQTKQEQ GISNMPLIYR YNTEVEKGKL WDSITELTNR FVYDIRKLLT 360
  361 ILQKQVDILQ SKIEWEMHVV TGEFMHLIEL LRKMAQALQL LILEKNSYVT WMETETKGTI 420
  421 HSTVLYGQPV HIAERFADEF LTEKKSVIFT SATLTVNDSF AYIKEELGLH DFAPNTLQVP 480
  481 SPFRFEEQMK LMVSTDVPFI KKASNEEYIE SVSAHIAKIA KATKGRMLVL FTSYEMLKEA 540
  541 YTNLKNDEEL EGYLLLTQSV NNKSRSRLIR KFQEFDKSIL LGTSSFWEGI DIPGDALSCL 600
  601 VIVRLPFTPP YQPMIEAKGE WLKNQGEDVF AKLALPQAIL RFKQGFGRLI RTSTDTGTVF 660
  661 VLDRRLTSSS YGKYFLQSIP TVPLYEGPLE ELLEQVKERP TE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	84.69897
Match:	1d9xA
Description:	Nucleotide excision repair enzyme UvrB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleoside-triphosphatase activity	1.24600280608126	bayes_pls_golite062009
pyrophosphatase activity	1.24473801560965	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.22399477088226	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.22305439350957	bayes_pls_golite062009
binding	1.15116915808666	bayes_pls_golite062009
hydrolase activity	1.12103771739722	bayes_pls_golite062009
catalytic activity	1.00104173493322	bayes_pls_golite062009
ATPase activity	0.586053527252563	bayes_pls_golite062009
helicase activity	0.113520297233174	bayes_pls_golite062009
DNA-dependent ATPase activity	0.0863785441153608	bayes_pls_golite062009
nucleotide binding	0.0188404002299471	bayes_pls_golite062009
purine nucleotide binding	0.0142207617615038	bayes_pls_golite062009
purine ribonucleotide binding	0.00410396371520677	bayes_pls_golite062009
ribonucleotide binding	0.0038904924070306	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: