YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260811, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	322 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260811, gi|....

Description	E-value	Query Range	Subject Range
gi\|218773823, gi... - gi\|218893595\|ref\|YP_002442464.1\| putative permease of ABC transporter [Pseudomonas aeruginosa LESB58... gi\|126198063, gi... - gi\|254244685\|ref\|ZP_04938007.1\| permease of ABC transporter [Pseudomonas aeruginosa 2192], gi\|194555... gi\|116052534, gi... - gi\|116052534\|ref\|YP_792848.1\| ABC transporter permease [Pseudomonas aeruginosa UCBPP-PA14], gi\|11558...	2.0E-67	[1..320]	[1..333]
gi\|24982296, gi\|... - gi\|26987617\|ref\|NP_743042.1\| alkaline phosphatase [Pseudomonas putida KT2440], gi\|24982296\|gb\|AAN665... gi\|148546163, gi... - gi\|82736045\|ref\|ZP_00898906.1\| dipeptide ABC transporter, permease protein [Pseudomonas putida F1], ... tr\|I7AY84\|I7AY84... - Alkaline phosphatase OS=Pseudomonas putida (strain DOT-T1E) GN=dppB PE=3 SV=1	2.0E-67	[1..320]	[1..333]
gi\|68342559, gi\|... - gi\|70728260\|ref\|YP_258009.1\| dipeptide ABC transporter, permease protein [Pseudomonas fluorescens Pf...	2.0E-67	[1..320]	[19..351]
gi\|56909252, gi\|... - gi\|56963013\|ref\|YP_174740.1\| oligopeptide ABC transporter permease [Bacillus clausii KSM-K16], gi\|56...	3.0E-67	[1..322]	[1..334]
gi\|95109259 - gi\|95109259\|emb\|CAK13956.1\| dipeptide ABC transporter, permease protein [Pseudomonas entomophila L48... gi\|95109259, gi\|... - gi\|95109259\|emb\|CAK13956.1\| dipeptide ABC transporter, permease protein [Pseudomonas entomophila L48...	3.0E-67	[1..320]	[1..333]
gi\|123444255, gi... - gi\|123444255\|ref\|YP_001008223.1\| dipeptide transporter permease DppB [Yersinia enterocolitica subsp.... gi\|77976536 - gi\|77976536\|ref\|ZP_00832020.1\| COG0601: ABC-type dipeptide/oligopeptide/nickel transport systems, pe...	4.0E-67	[1..320]	[1..336]
gi\|78044226, gi\|... - gi\|78044226\|ref\|YP_359975.1\| oligopeptide/dipeptide ABC transporter, permease protein [Carboxydother...	4.0E-67	[1..321]	[1..333]
gi\|78518535, gi\|... - gi\|78692980\|ref\|ZP_00857494.1\| ABC transporter permease protein [Bradyrhizobium sp. BTAi1], gi\|78518...	5.0E-67	[1..320]	[63..374]
gi\|153946908, gi... - gi\|77631034\|ref\|ZP_00793620.1\| COG0601: ABC-type dipeptide/oligopeptide/nickel transport systems, pe... gi\|229904324, gi... - gi\|229904324\|ref\|ZP_04519435.1\| Dipeptide transport system permease protein DppB [Yersinia pestis Ne... Q664C8\|Q664C8_YERPS - ABC dipeptide transporter, permease subunit - Yersinia pseudotuberculosis gi\|51598131, gi\|... - gi\|51598131\|ref\|YP_072322.1\| dipeptide transporter permease DppB [Yersinia pseudotuberculosis IP 329... gi\|170022350, gi... - gi\|170022350\|ref\|YP_001718855.1\| dipeptide transporter permease DppB [Yersinia pseudotuberculosis YP... gi\|145600618, gi... - gi\|145600618\|ref\|YP_001164694.1\| dipeptide transporter permease DppB [Yersinia pestis Pestoides F], ...	5.0E-67	[1..320]	[1..336]
gi\|77961987 - gi\|77961987\|ref\|ZP_00825814.1\| COG0601: ABC-type dipeptide/oligopeptide/nickel transport systems, pe...	6.0E-67	[1..320]	[1..336]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWKFILRRIL VMIPQLFVLS VLVFTLAKAM PGDALSGAEL ANPKADPKVI EEQREKLGLN  60
   61 DPIPTQYVRW ISNAVQGDFG ISYAHKI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [88-322]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QVTDIIGERL GNTVLLALLI LILTYLIAIP LGVISGRWND TWADRLITLY NFLGFGTPLF  60
   61 IFGLVMLFLF GFLYPIFPTS GSVDPQVAAG SFDYYLSKLN HMILPALSGA LIGTVGTVQY 120
  121 LRSEIIDTKH KDFVRTVKAK GVPESKVYSR HILRNSFLPI AAFLGYEITG LVGGSIILEN 180
  181 IFGYPGIGQL FFQSITQRDF SVVTALVLFT GFATLLGTLL SDIILSIVDP RIRID

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.21
Match:	2onkC
Description:	No description for 2onkC was found.

Predicted functions:

Term	Confidence	Notes
ATPase activity, coupled to transmembrane movement of substances	7.61517440483825	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	7.61475955752567	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	7.61475955752567	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	7.60261285611608	bayes_pls_golite062009
primary active transmembrane transporter activity	7.59280303111267	bayes_pls_golite062009
active transmembrane transporter activity	7.51217805691059	bayes_pls_golite062009
ATPase activity, coupled	6.95724531600418	bayes_pls_golite062009
ATPase activity	6.62620720611918	bayes_pls_golite062009
nucleoside-triphosphatase activity	6.31173441402571	bayes_pls_golite062009
pyrophosphatase activity	6.23822548232138	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	6.21828378422716	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	6.21791205758921	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	5.46058403247103	bayes_pls_golite062009
ion transmembrane transporter activity	4.84048533553771	bayes_pls_golite062009
hydrolase activity	4.5940497987178	bayes_pls_golite062009
cation transmembrane transporter activity	4.17977204081224	bayes_pls_golite062009
transporter activity	4.16850252614298	bayes_pls_golite062009
transmembrane transporter activity	4.07281957844021	bayes_pls_golite062009
substrate-specific transporter activity	3.61142533583701	bayes_pls_golite062009
metal ion transmembrane transporter activity	2.9260252024097	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	2.85525880225875	bayes_pls_golite062009
iron ion transmembrane transporter activity	2.46453467908178	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	2.19359047382598	bayes_pls_golite062009
sugar transmembrane transporter activity	2.147054904918	bayes_pls_golite062009
sulfate transmembrane-transporting ATPase activity	2.12981939421008	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	1.90343616526346	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	1.6718548573993	bayes_pls_golite062009
oligosaccharide-transporting ATPase activity	1.62768691451517	bayes_pls_golite062009
oligosaccharide transmembrane transporter activity	1.62768691451517	bayes_pls_golite062009
maltose-transporting ATPase activity	1.62768691451517	bayes_pls_golite062009
alpha-glucoside transmembrane transporter activity	1.5877861023737	bayes_pls_golite062009
maltose transmembrane transporter activity	1.5877861023737	bayes_pls_golite062009
disaccharide transmembrane transporter activity	1.5877861023737	bayes_pls_golite062009
glucoside transmembrane transporter activity	1.54998466398412	bayes_pls_golite062009
anion transmembrane transporter activity	1.53656434391799	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	1.4745579365074	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	0.737817335114385	bayes_pls_golite062009
secondary active transmembrane transporter activity	0.634824157502542	bayes_pls_golite062009
catalytic activity	0.350058049038907	bayes_pls_golite062009
sulfate transmembrane transporter activity	0.314028059232496	bayes_pls_golite062009
solute:cation symporter activity	0.0914244193736007	bayes_pls_golite062009
symporter activity	0.0914244193736007	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: