YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260348, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	600 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260348, gi|....

Description	E-value	Query Range	Subject Range
gi\|241883681, gi... - gi\|241903963\|ref\|ZP_04788677.1\| glucosamine/fructose-6-phosphate aminotransferase, isomerizing [Ther... gi\|167036896, gi... - gi\|76796530\|ref\|ZP_00778890.1\| Glucosamine-fructose-6-phosphate aminotransferase, isomerising [Therm...	0.0	[1..600]	[1..608]
gi\|89151243, gi\|... - gi\|89200641\|ref\|ZP_01179392.1\| Glucosamine-fructose-6-phosphate aminotransferase, isomerising [Bacil...	0.0	[1..600]	[1..600]
gi\|114805770, gi... - gi\|167039602\|ref\|YP_001662587.1\| D-fructose-6-phosphate amidotransferase [Thermoanaerobacter sp. X51... gi\|242231021, gi... - gi\|242257465\|ref\|ZP_04802329.1\| glucosamine/fructose-6-phosphate aminotransferase, isomerizing [Ther...	0.0	[1..600]	[1..608]
gi\|228640462, gi... - gi\|229142965\|ref\|ZP_04271405.1\| Glucosamine--fructose-6-phosphate aminotransferase [Bacillus cereus ... gi\|228657730, gi... - gi\|229125677\|ref\|ZP_04254707.1\| Glucosamine--fructose-6-phosphate aminotransferase [Bacillus cereus ... GLMS_BACCR - Glutamine--fructose-6-phosphate aminotransferase [isomerizing] OS=Bacillus cereus (strain ATCC 14579...	0.0	[1..600]	[1..600]
gi\|51978531, gi\|... - gi\|52145062\|ref\|YP_081768.1\| D-fructose-6-phosphate amidotransferase [Bacillus cereus E33L], gi\|5197... gi\|228912897, gi... - gi\|228912897\|ref\|ZP_04076543.1\| Glucosamine--fructose-6-phosphate aminotransferase [Bacillus thuring...	0.0	[1..600]	[1..600]
GLMS_BACLD - Glutamine--fructose-6-phosphate aminotransferase [isomerizing] OS=Bacillus licheniformis (strain ATC...	0.0	[1..600]	[1..600]
gi\|217957732, gi... - gi\|217957732\|ref\|YP_002336276.1\| glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [B... gi\|206743763, gi... - gi\|206978050\|ref\|ZP_03238935.1\| glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [Ba... gi\|222093927, gi... - gi\|222093927\|ref\|YP_002527978.1\| glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [B... gi\|229137005, gi... - gi\|229137005\|ref\|ZP_04265631.1\| Glucosamine--fructose-6-phosphate aminotransferase [Bacillus cereus ... gi\|229194548, gi... - gi\|229194548\|ref\|ZP_04321350.1\| Glucosamine--fructose-6-phosphate aminotransferase [Bacillus cereus ... GLMS_BACC1 - Glutamine--fructose-6-phosphate aminotransferase [isomerizing] OS=Bacillus cereus (strain ATCC 10987...	0.0	[1..600]	[1..600]
gi\|218543538, gi... - gi\|218895292\|ref\|YP_002443703.1\| glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [B... gi\|74494087, gi\|... - gi\|75758460\|ref\|ZP_00738582.1\| Glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [Bac... gi\|228905955, gi... - gi\|228905955\|ref\|ZP_04069851.1\| Glucosamine--fructose-6-phosphate aminotransferase [Bacillus thuring... gi\|228860728, gi... - gi\|228898912\|ref\|ZP_04063193.1\| Glucosamine--fructose-6-phosphate aminotransferase [Bacillus thuring... gi\|228970348, gi... - gi\|228970348\|ref\|ZP_04131006.1\| Glucosamine--fructose-6-phosphate aminotransferase [Bacillus thuring... gi\|228937461, gi... - gi\|228937461\|ref\|ZP_04100106.1\| Glucosamine--fructose-6-phosphate aminotransferase [Bacillus thuring... gi\|228976918, gi... - gi\|228976918\|ref\|ZP_04137329.1\| Glucosamine--fructose-6-phosphate aminotransferase [Bacillus thuring...	0.0	[1..600]	[1..600]
gi\|228629457, gi... - gi\|229153936\|ref\|ZP_04282065.1\| Glucosamine--fructose-6-phosphate aminotransferase [Bacillus cereus ... gi\|228983414, gi... - gi\|228983414\|ref\|ZP_04143626.1\| Glucosamine--fructose-6-phosphate aminotransferase [Bacillus thuring... gi\|47570175, gi\|... - gi\|47570175\|ref\|ZP_00240830.1\| glucosamine--fructose-6-phosphate aminotransferase, isomerizing [Baci...	0.0	[1..600]	[1..600]
GLMS_BACHK - Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] OS=Bacillus thuringiensis subsp. ko... gi\|228663567, gi... - gi\|229119820\|ref\|ZP_04249080.1\| Glucosamine--fructose-6-phosphate aminotransferase [Bacillus cereus ... GLMS_BACHK - Glutamine--fructose-6-phosphate aminotransferase [isomerizing] OS=Bacillus thuringiensis subsp. konk...	0.0	[1..600]	[1..600]

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Predicted Domain #1

Region A:
Residues: [1-600]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCGIVGFIGE QDAKEILLKG LEKLEYRGYD SAGIAVQAEN GVVVYKEKGR IAKLREIVDE  60
   61 NVAASVGIGH TRWATHGVPS KVNAHPHQST SKRFTLVHNG VIENYELVKK EYLQDVTFVS 120
  121 ETDTEVIVQL MEQQVSTGLS VEEAFRNTLS LLHGSYAIGL LDAENPNMIY VAKNKSPLLV 180
  181 GVGDNFNVVA SDAMAMLQVT DQFIELMDKE IVIVMKESIT IKNLQGETIE RAPFTAELDA 240
  241 SDIEKGTYPH FMLKEIDEQP LVIRNIIQKY QDENGEIELD QDIRNAILDS DRIYIIACGT 300
  301 SYHAGLVGKQ FIEKFAKMPV EVHVASEFSY NMPLLTERPF FIYISQSGET ADSRAVLVQT 360
  361 NEMGHKALTI TNVPGSTLSR EADYTLPLYA GPEIAVASTK AYTAQLAVLS ILAADIAKAK 420
  421 GEVLGFDLTH ELGLVANAMI ELCDQKEEMD ALAKQFLATT RNCFFIGRSV DFYVGLEGAL 480
  481 KLKEISYIQA EGFAGGELKH GTIALIENGT PVIALATQEH VNLGIRGNVK EVVARGANPC 540
  541 IISMKGLEME GDSFVLPAVH EALAPLVAVI PLQLISYYAA LHRECDVDKP RNLAKSVTVE 600
  601

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	138.0
Match:	1jxaA
Description:	"Isomerase domain" of glucosamine 6-phosphate synthase (GLMS); Glucosamine 6-phosphate synthase, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
glutamine-fructose-6-phosphate transaminase (isomerizing) activity	4.12465195642555	bayes_pls_golite062009
glucose-6-phosphate isomerase activity	2.74527495029339	bayes_pls_golite062009
D-sedoheptulose 7-phosphate isomerase activity	2.03357282678145	bayes_pls_golite062009
intramolecular oxidoreductase activity	1.99606027864666	bayes_pls_golite062009
catalytic activity	1.5278037255884	bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting aldoses and ketoses	1.49939040101274	bayes_pls_golite062009
sugar binding	1.40175307923331	bayes_pls_golite062009
isomerase activity	0.875614547872629	bayes_pls_golite062009
binding	0.8320110584046	bayes_pls_golite062009
nucleic acid binding	0.798789250029517	bayes_pls_golite062009
peptidase activity	0.627053118023721	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	0.478737143854577	bayes_pls_golite062009
transferase activity, transferring nitrogenous groups	0.329741341879618	bayes_pls_golite062009
transaminase activity	0.307877519336205	bayes_pls_golite062009
protein binding	0.152745336606766	bayes_pls_golite062009
endopeptidase activity	0.0940838340168359	bayes_pls_golite062009
transferase activity	0.0523744832826621	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: