YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260343, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	297 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260343, gi|....

Description	E-value	Query Range	Subject Range
gi\|218901358, gi... - gi\|218901358\|ref\|YP_002449192.1\| arginase [Bacillus cereus AH820], gi\|218536238\|gb\|ACK88636.1\| argin... gi\|195991378, gi... - gi\|196036009\|ref\|ZP_03103410.1\| arginase [Bacillus cereus W], gi\|195991378\|gb\|EDX55345.1\| arginase [... gi\|228834241, gi... - gi\|228925408\|ref\|ZP_04088503.1\| Arginase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1],... gi\|49330776, gi\|... - gi\|49479220\|ref\|YP_034504.1\| arginase [Bacillus thuringiensis serovar konkukian str. 97-27], gi\|4933... gi\|229119816, gi... - gi\|229119816\|ref\|ZP_04249076.1\| Arginase [Bacillus cereus 95/8201], gi\|228663563\|gb\|EEL19143.1\| Argi... gi\|229089286, gi... - gi\|229089286\|ref\|ZP_04220566.1\| Arginase [Bacillus cereus Rock3-42], gi\|228694032\|gb\|EEL47715.1\| Arg... gi\|228943960, gi... - gi\|228943960\|ref\|ZP_04106344.1\| Arginase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1], gi\|22...	4.0E-93	[1..297]	[1..297]
gi\|47553149, gi\|... - gi\|47570170\|ref\|ZP_00240825.1\| arginase [Bacillus cereus G9241], gi\|47553149\|gb\|EAL11545.1\| arginase...	6.0E-93	[1..297]	[1..297]
gi\|228846708, gi... - gi\|228912893\|ref\|ZP_04076539.1\| Arginase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1], gi\|2... gi\|225862205, gi... - gi\|225862205\|ref\|YP_002747583.1\| arginase [Bacillus cereus 03BB102], gi\|225788362\|gb\|ACO28579.1\| arg... gi\|51978540, gi\|... - gi\|52145071\|ref\|YP_081763.1\| arginase [Bacillus cereus E33L], gi\|51978540\|gb\|AAU20090.1\| arginase [B... gi\|196028071, gi... - gi\|196041136\|ref\|ZP_03108432.1\| arginase [Bacillus cereus NVH0597-99], gi\|196028071\|gb\|EDX66682.1\| a... gi\|118475920, gi... - gi\|118475920\|ref\|YP_893071.1\| arginase [Bacillus thuringiensis str. Al Hakam], gi\|118415145\|gb\|ABK83... gi\|228931656, gi... - gi\|228931656\|ref\|ZP_04094561.1\| Arginase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1], ...	9.0E-93	[1..297]	[1..297]
gi\|229131162, gi... - gi\|229131162\|ref\|ZP_04260073.1\| Arginase [Bacillus cereus BDRD-ST196], gi\|228652296\|gb\|EEL08222.1\| A... gi\|89156285, gi\|... - gi\|89205695\|ref\|ZP_01184262.1\| Arginase [Bacillus weihenstephanensis KBAB4], gi\|89156285\|gb\|EAR76286...	1.0E-92	[1..297]	[1..297]
gi\|228905951, gi... - gi\|228905951\|ref\|ZP_04069847.1\| Arginase [Bacillus thuringiensis IBL 200], gi\|228853684\|gb\|EEM98445.... gi\|218895288, gi... - gi\|218895288\|ref\|YP_002443699.1\| arginase [Bacillus cereus G9842], gi\|218541904\|gb\|ACK94298.1\| argin... gi\|228898908, gi... - gi\|228898908\|ref\|ZP_04063189.1\| Arginase [Bacillus thuringiensis IBL 4222], gi\|228860724\|gb\|EEN05103... gi\|75758466, gi\|... - gi\|75758466\|ref\|ZP_00738588.1\| Arginase [Bacillus thuringiensis serovar israelensis ATCC 35646], gi\|... gi\|228796428, gi... - gi\|228963254\|ref\|ZP_04124422.1\| Arginase [Bacillus thuringiensis serovar sotto str. T04001], gi\|2287...	2.0E-92	[1..297]	[1..297]
gi\|228808938, gi... - gi\|228950702\|ref\|ZP_04112835.1\| Arginase [Bacillus thuringiensis serovar kurstaki str. T03a001], gi\|... gi\|228822207, gi... - gi\|228937457\|ref\|ZP_04100102.1\| Arginase [Bacillus thuringiensis serovar berliner ATCC 10792], gi\|22... gi\|228727232, gi... - gi\|229041060\|ref\|ZP_04189822.1\| Arginase [Bacillus cereus AH676], gi\|228727232\|gb\|EEL78427.1\| Argina... gi\|30018422, gi\|... - gi\|30018422\|ref\|NP_830053.1\| arginase [Bacillus cereus ATCC 14579], gi\|29893962\|gb\|AAP07254.1\| Argin... gi\|228976914, gi... - gi\|228976914\|ref\|ZP_04137325.1\| Arginase [Bacillus thuringiensis Bt407], gi\|228782799\|gb\|EEM30966.1\|... gi\|228789368, gi... - gi\|228970344\|ref\|ZP_04131002.1\| Arginase [Bacillus thuringiensis serovar thuringiensis str. T01001],... gi\|228956596, gi... - gi\|228956596\|ref\|ZP_04118391.1\| Arginase [Bacillus thuringiensis serovar pakistani str. T13001], gi\|... gi\|229125673, gi... - gi\|229125673\|ref\|ZP_04254703.1\| Arginase [Bacillus cereus BDRD-Cer4], gi\|228657726\|gb\|EEL13534.1\| Ar... gi\|228675605, gi... - gi\|229107840\|ref\|ZP_04237475.1\| Arginase [Bacillus cereus Rock1-15], gi\|228675605\|gb\|EEL30814.1\| Arg... gi\|229082989, gi... - gi\|229082989\|ref\|ZP_04215409.1\| Arginase [Bacillus cereus Rock4-2], gi\|228700326\|gb\|EEL52892.1\| Argi... gi\|228715195, gi... - gi\|229067919\|ref\|ZP_04201235.1\| Arginase [Bacillus cereus F65185], gi\|228715195\|gb\|EEL67055.1\| Argin... gi\|228594994, gi... - gi\|229188440\|ref\|ZP_04315487.1\| Arginase [Bacillus cereus ATCC 10876], gi\|228594994\|gb\|EEK52766.1\| A... gi\|229176755, gi... - gi\|229176755\|ref\|ZP_04304157.1\| Arginase [Bacillus cereus 172560W], gi\|228606647\|gb\|EEK64066.1\| Argi... gi\|229148565, gi... - gi\|229148565\|ref\|ZP_04276819.1\| Arginase [Bacillus cereus m1550], gi\|228634823\|gb\|EEK91398.1\| Argina... gi\|229142961, gi... - gi\|229142961\|ref\|ZP_04271401.1\| Arginase [Bacillus cereus BDRD-ST24], gi\|228640458\|gb\|EEK96848.1\| Ar... gi\|218160436, gi... - gi\|218232479\|ref\|YP_002365002.1\| arginase [Bacillus cereus B4264], gi\|218160436\|gb\|ACK60428.1\| argin... gi\|206972218, gi... - gi\|206972218\|ref\|ZP_03233165.1\| arginase [Bacillus cereus AH1134], gi\|206732792\|gb\|EDZ49967.1\| argin...	2.0E-92	[1..297]	[1..297]
gi\|196022906, gi... - gi\|196046161\|ref\|ZP_03113388.1\| arginase [Bacillus cereus 03BB108], gi\|196022906\|gb\|EDX61586.1\| argi... gi\|42735150, gi\|... - gi\|42779235\|ref\|NP_976482.1\| arginase [Bacillus cereus ATCC 10987], gi\|42735150\|gb\|AAS39090.1\| argin... gi\|229182550, gi... - gi\|229182550\|ref\|ZP_04309799.1\| Arginase [Bacillus cereus BGSC 6E1], gi\|228600879\|gb\|EEK58450.1\| Arg...	3.0E-92	[1..297]	[1..297]
gi\|152973999, gi... - gi\|89200636\|ref\|ZP_01179387.1\| Arginase [Bacillus cereus subsp. cytotoxis NVH 391-98], gi\|89151238\|g...	1.0E-90	[1..297]	[1..297]
ARGI_BACSU - Arginase OS=Bacillus subtilis GN=rocF PE=2 SV=1 gi\|221325528 - gi\|221325528\|ref\|ZP_03606822.1\| arginase [Bacillus subtilis subsp. subtilis str. SMY] gi\|221321245 - gi\|221321245\|ref\|ZP_03602539.1\| arginase [Bacillus subtilis subsp. subtilis str. JH642] gi\|221316332 - gi\|221316332\|ref\|ZP_03598137.1\| arginase [Bacillus subtilis subsp. subtilis str. NCIB 3610] ARGI_BACSU - Arginase OS=Bacillus subtilis (strain 168) GN=rocF PE=1 SV=1	6.0E-90	[1..296]	[1..295]
gi\|56378526, gi\|... - gi\|56418684\|ref\|YP_146002.1\| arginase [Geobacillus kaustophilus HTA426], gi\|56378526\|dbj\|BAD74434.1\|...	2.0E-88	[3..296]	[2..298]

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Predicted Domain #1

Region A:
Residues: [1-297]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKEISVIGV PMDLGQMRRG VDMGPSAIRY AGVIERIEEI GYDVKDMGDI CIEREKEVDV  60
   61 NTSLRNLTQV ATVCNELASK VDHIIEEGRF PLVLGGDHSI AIGTLAGVAK HYKNLGVIWY 120
  121 DAHGDLNTEE TSPSGNIHGM SLAASLGYGH PTLVDLYGAY PKVKKENVVI IGARALDEGE 180
  181 KDFIRNEGIK VFTMHEIDRM GMTAVMEETI EYLSHTDGVH LSLDLDGLDP HDAPGVGTPV 240
  241 IGGLSYRESH LAMEMLAEAD IVTSAEFVEV NMILDERNRT ATTAVALMGS LFGEKLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	89.69897
Match:	1cevA
Description:	Arginase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
arginase activity	6.53441421234691	bayes_pls_golite062009
agmatinase activity	3.73238467801147	bayes_pls_golite062009
protein deacetylase activity	3.15425266272734	bayes_pls_golite062009
histone deacetylase activity	3.10913119405575	bayes_pls_golite062009
transcription regulator activity	2.52770743634098	bayes_pls_golite062009
hydrolase activity	2.11707868768295	bayes_pls_golite062009
transcription factor binding	2.06538836131829	bayes_pls_golite062009
binding	1.948738669065	bayes_pls_golite062009
deacetylase activity	1.91016771390707	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.72243397396987	bayes_pls_golite062009
transcription repressor activity	1.70671280294121	bayes_pls_golite062009
catalytic activity	1.68836803454021	bayes_pls_golite062009
nucleic acid binding	1.59562744871718	bayes_pls_golite062009
DNA binding	1.55288325159263	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines	1.01223037319069	bayes_pls_golite062009
transcription factor activity	0.882841288306625	bayes_pls_golite062009
protein binding	0.725535842743004	bayes_pls_golite062009
transcription cofactor activity	0.68008378742866	bayes_pls_golite062009
transcription corepressor activity	0.52929003055123	bayes_pls_golite062009
enzyme binding	0.39566582482721	bayes_pls_golite062009
specific transcriptional repressor activity	0.38389503761392	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	0.0917282383800223	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: