YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29540911, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	280 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29540911, gi|....

Description	E-value	Query Range	Subject Range
gi\|94491020, gi\|... - gi\|94491020\|ref\|ZP_01298241.1\| hypothetical protein CburD_01001905 [Coxiella burnetii Dugway 7E9-12]...	301.0	[0..1]	[280..1]
gi\|186682253, gi... - gi\|23125873\|ref\|ZP_00107790.1\| COG0796: Glutamate racemase [Nostoc punctiforme PCC 73102], gi\|186682...	294.0	[0..6]	[274..23]
gi\|25291677 - pir\|\|AF1818 glutamate racemase [imported] - Nostoc sp. (strain PCC 7120) MURI_NOSS1 - Glutamate racemase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=murI PE=3 SV=1	289.0	[0..6]	[274..23]
MURI_ANAVT - Glutamate racemase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=murI PE=3 SV=1	286.0	[0..6]	[274..23]
gi\|39998014, gi\|... - gi\|39998014\|ref\|NP_953965.1\| glutamate racemase [Geobacter sulfurreducens PCA], gi\|39984959\|gb\|AAR36...	285.0	[0..2]	[268..1]
gi\|38174839, gi\|... - gi\|38174839\|emb\|CAD70220.1\| glutamate racemase [Microcystis aeruginosa PCC 7806], gi\|159027640\|emb\|C... gi\|38174839 - gi\|38174839\|emb\|CAD70220.1\| glutamate racemase [Microcystis aeruginosa PCC 7806]	284.0	[0..1]	[267..1]
gi\|50590267, gi\|... - gi\|81177085\|ref\|ZP_00875979.1\| Glutamate racemase [Streptococcus suis 89/1591], gi\|80976216\|gb\|EAP39...	284.0	[0..2]	[267..1]
gi\|149025005, gi... - gi\|149025005\|ref\|ZP_01836385.1\| glutamate racemase [Streptococcus pneumoniae SP23-BS72], gi\|14792949... gi\|147764244, gi... - gi\|149011254\|ref\|ZP_01832501.1\| glutamate racemase [Streptococcus pneumoniae SP19-BS75], gi\|14776424... gi\|149006464, gi... - gi\|149006464\|ref\|ZP_01830163.1\| glutamate racemase [Streptococcus pneumoniae SP18-BS74], gi\|14776176... MURI_STRZJ - Glutamate racemase OS=Streptococcus pneumoniae (strain JJA) GN=murI PE=3 SV=1 MURI_STRPJ - Glutamate racemase OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=murI PE=3 SV=1 MURI_STRZT - Glutamate racemase OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=murI PE=3 SV=1 MURI_STRPS - Glutamate racemase OS=Streptococcus pneumoniae (strain CGSP14) GN=murI PE=3 SV=1 gi\|242245075, gi... - gi\|242245075\|ref\|ZP_04799512.1\| glutamate racemase [Streptococcus pneumoniae TCH8431/19A], gi\|242236... MURI_STRZP - Glutamate racemase OS=Streptococcus pneumoniae (strain P1031) GN=murI PE=3 SV=1 MURI_STRP7 - Glutamate racemase OS=Streptococcus pneumoniae (strain 70585) GN=murI PE=3 SV=1 gi\|183575767, gi... - gi\|183575767\|gb\|EDT96295.1\| glutamate racemase [Streptococcus pneumoniae CDC3059-06], gi\|168494203\|r... MURI_STRP2 - Glutamate racemase OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=murI PE=3 SV=1 gi\|183573878, gi... - gi\|183573878\|gb\|EDT94406.1\| glutamate racemase [Streptococcus pneumoniae CDC0288-04], gi\|168491804\|r... MURI_STRPN - Glutamate racemase OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=murI PE=3... MURI_STRPI - Glutamate racemase OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=murI PE=3 SV=1 gi\|168574930, gi... - gi\|183578940\|gb\|EDT99468.1\| glutamate racemase [Streptococcus pneumoniae MLV-016], gi\|168574930\|ref\|... gi\|148998745, gi... - gi\|148998745\|ref\|ZP_01826183.1\| glutamate racemase [Streptococcus pneumoniae SP11-BS70], gi\|14775543... gi\|168483413, gi... - gi\|172043246\|gb\|EDT51292.1\| glutamate racemase [Streptococcus pneumoniae CDC1873-00], gi\|168483413\|r... MURI_STRPN - Glutamate racemase OS=Streptococcus pneumoniae GN=murI PE=3 SV=1 gi\|147928106, gi... - gi\|148993339\|ref\|ZP_01822879.1\| glutamate racemase [Streptococcus pneumoniae SP9-BS68], gi\|147928106... gi\|168489841, gi... - gi\|183571721\|gb\|EDT92249.1\| glutamate racemase [Streptococcus pneumoniae SP195], gi\|168489841\|ref\|ZP... MURI_STRR6 - Glutamate racemase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=murI PE=3 SV=1 gi\|168487311, gi... - gi\|183569790\|gb\|EDT90318.1\| glutamate racemase [Streptococcus pneumoniae CDC1087-00], gi\|168487311\|r...	284.0	[0..2]	[267..1]
gi\|69246346, gi\|... - gi\|69246346\|ref\|ZP_00603902.1\| Glutamate racemase [Enterococcus faecium DO], gi\|68195299\|gb\|EAN09750...	283.0	[0..1]	[267..8]
MURI_STRPM - Glutamate racemase OS=Streptococcus pyogenes serotype M28 (strain MGAS6180) GN=murI PE=3 SV=1 MURI_STRPM - Glutamate racemase OS=Streptococcus pyogenes serotype M28 GN=murI PE=3 SV=1	282.0	[0..2]	[267..1]

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Predicted Domain #1

Region A:
Residues: [1-280]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNGRPIGVF DSGMGGLTVL RELVNHLPNE SYIYLGDTAR LPYGTKSPET VSRYATQMAS  60
   61 ILIAQNIKLL VVACNTASTA ALPQLQQQFS HIPIIGVVEP GARAAVVATK NNKVALLATE 120
  121 TTIQSGIYQN TLRALSPQIE ITTQTCGLFV ALAEEGCTND EIALLVAKKY LEPIINGYHQ 180
  181 CDSVILGCTH FPVLMEPLAA ILGDQINIIN SAKATATEVQ SILQKNNPTP LDHPPTLSFL 240
  241 VTDSPERFTR IGEIFFGRGI DAKKVHLIDG QYSQSFKTPK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.69897
Match:	2ohoA
Description:	No description for 2ohoA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits