YRC Public Data Repository - Protein Structure Prediction

Protein:	GLMS_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	609 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLMS_SHEON.

Description	E-value	Query Range	Subject Range
gi\|83571319, gi\|... - gi\|83571319\|ref\|ZP_00922759.1\| COG0449: Glucosamine 6-phosphate synthetase, contains amidotransferas...	570.0	[0..1]	[609..1]
gi\|73857722, gi\|... - gi\|74314245\|ref\|YP_312664.1\| D-fructose-6-phosphate amidotransferase [Shigella sonnei Ss046], gi\|738...	570.0	[0..1]	[609..1]
gi\|25287308 - pir\|\|G91212 hypothetical protein ECs4671 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|15833925, gi\|... - gi\|15833925\|ref\|NP_312698.1\| D-fructose-6-phosphate amidotransferase [Escherichia coli O157:H7], gi\|... gi\|15833925, gi\|... - gi\|15833925\|ref\|NP_312698.1\| glucosamine--fructose-6-phosphate aminotransferase [Escherichia coli O1...	570.0	[0..1]	[609..1]
gi\|187733589, gi... - gi\|75177701\|ref\|ZP_00697766.1\| COG0449: Glucosamine 6-phosphate synthetase, contains amidotransferas...	570.0	[0..1]	[609..1]
gi\|170681402, gi... - gi\|170681402\|ref\|YP_001746059.1\| glutamine-fructose-6-phosphate transaminase (isomerizing) [Escheric... gi\|218372565, gi... - gi\|218702579\|ref\|YP_002410208.1\| glucosamine--fructose-6-phosphate aminotransferase [Escherichia col... gi\|215267139, gi... - gi\|215489067\|ref\|YP_002331498.1\| glucosamine--fructose-6-phosphate aminotransferase [Escherichia col... gi\|226902794, gi... - gi\|237703530\|ref\|ZP_04534011.1\| L-glutamine:D-fructose-6-phosphate aminotransferase [Escherichia sp.... gi\|218707375, gi... - gi\|218707375\|ref\|YP_002414894.1\| glucosamine--fructose-6-phosphate aminotransferase [Escherichia col... GLMS_SHIFL - Glutamine--fructose-6-phosphate aminotransferase [isomerizing] OS=Shigella flexneri GN=glmS PE=3 SV=... gi\|110617101, gi... - gi\|110807553\|ref\|YP_691073.1\| D-fructose-6-phosphate amidotransferase [Shigella flexneri 5 str. 8401... gi\|24054291, gi\|... - gi\|24115032\|ref\|NP_709542.1\| D-fructose-6-phosphate amidotransferase [Shigella flexneri 2a str. 301]... gi\|188489293, gi... - gi\|75514205\|ref\|ZP_00736513.1\| COG0449: Glucosamine 6-phosphate synthetase, contains amidotransferas... gi\|30043227, gi\|... - gi\|30064966\|ref\|NP_839137.1\| D-fructose-6-phosphate amidotransferase [Shigella flexneri 2a str. 2457... gi\|91213253, gi\|... - gi\|91213253\|ref\|YP_543239.1\| D-fructose-6-phosphate amidotransferase [Escherichia coli UTI89], gi\|91...	570.0	[0..1]	[609..1]
gi\|115515126, gi... - gi\|117626002\|ref\|YP_859325.1\| D-fructose-6-phosphate amidotransferase [Escherichia coli APEC O1], gi...	570.0	[0..1]	[609..1]
gi\|83588406, gi\|... - gi\|83588406\|ref\|ZP_00927030.1\| COG0449: Glucosamine 6-phosphate synthetase, contains amidotransferas... gi\|157080617, gi... - gi\|75188487\|ref\|ZP_00701754.1\| COG0449: Glucosamine 6-phosphate synthetase, contains amidotransferas... gi\|157068890, gi... - gi\|75197625\|ref\|ZP_00707695.1\| COG0449: Glucosamine 6-phosphate synthetase, contains amidotransferas... gi\|75210661, gi\|... - gi\|75210661\|ref\|ZP_00710802.1\| COG0449: Glucosamine 6-phosphate synthetase, contains amidotransferas... EG10382 - L-glutamine:D-fructose-6-phosphate aminotransferase / Glucosamine-6-phosphate synthase; glucosamine-... gi\|191165793, gi... - gi\|75230998\|ref\|ZP_00717433.1\| COG0449: Glucosamine 6-phosphate synthetase, contains amidotransferas... gi\|192957549, gi... - gi\|75236461\|ref\|ZP_00720557.1\| COG0449: Glucosamine 6-phosphate synthetase, contains amidotransferas... gi\|193063823, gi... - gi\|75258268\|ref\|ZP_00729716.1\| COG0449: Glucosamine 6-phosphate synthetase, contains amidotransferas... GLMS_ECOLI - Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) (Hexosephosphate amin... gi\|85676309, gi\|... - gi\|89110278\|ref\|AP_004058.1\| L-glutamine:D-fructose-6-phosphate aminotransferase [Escherichia coli s... gi\|169757162, gi... - gi\|170022234\|ref\|YP_001727188.1\| glucosamine--fructose-6-phosphate aminotransferase [Escherichia col... gi\|209921210, gi... - gi\|209921210\|ref\|YP_002295294.1\| glucosamine--fructose-6-phosphate aminotransferase [Escherichia col... gi\|238861652, gi... - gi\|238902820\|ref\|YP_002928616.1\| L-glutamine:D-fructose-6-phosphate aminotransferase [Escherichia co... gi\|218354187, gi... - gi\|218697455\|ref\|YP_002405122.1\| glucosamine--fructose-6-phosphate aminotransferase [Escherichia col... gi\|242379267, gi... - gi\|251786994\|ref\|YP_003001298.1\| hypothetical protein B21_03557 [Escherichia coli BL21], gi\|24237926... gi\|254290431, gi... - gi\|254290431\|ref\|YP_003056179.1\| D-fructose-6-phosphate amidotransferase [Escherichia coli BL21(DE3)... gi\|226838913, gi... - gi\|254038948\|ref\|ZP_04873000.1\| glutamine-fructose-6-phosphate transaminase [Escherichia sp. 1_1_43]... gi\|254163681, gi... - gi\|254163681\|ref\|YP_003046789.1\| D-fructose-6-phosphate amidotransferase [Escherichia coli B str. RE... EG10382 - L-glutamine:D-fructose-6-phosphate aminotransferase / Glucosamine-6-phosphate synthase; glucosamine-... gi\|124530057, gi... - gi\|124530057\|ref\|ZP_01700840.1\| glucosamine--fructose-6-phosphate aminotransferase, isomerizing [Esc...	570.0	[0..1]	[609..1]
gi\|190909109, gi... - gi\|75242483\|ref\|ZP_00726227.1\| COG0449: Glucosamine 6-phosphate synthetase, contains amidotransferas... gi\|110345662, gi... - gi\|110644070\|ref\|YP_671800.1\| glucosamine--fructose-6-phosphate aminotransferase [Escherichia coli 5...	570.0	[0..1]	[609..1]
gi\|209158986, gi... - gi\|209397586\|ref\|YP_002273257.1\| glutamine-fructose-6-phosphate transaminase [Escherichia coli O157:... gi\|217321769, gi... - gi\|217325548\|ref\|ZP_03441632.1\| glutamine-fructose-6-phosphate transaminase [Escherichia coli O157:H... gi\|25287310, gi\|... - pir\|\|H86058 hypothetical protein glmS [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|195936356 - gi\|195936356\|ref\|ZP_03081738.1\| D-fructose-6-phosphate amidotransferase [Escherichia coli O157:H7 st... gi\|208806513, gi... - gi\|208806513\|ref\|ZP_03248850.1\| glutamine-fructose-6-phosphate transaminase [Escherichia coli O157:H... gi\|15804329, gi\|... - gi\|15804329\|ref\|NP_290368.1\| D-fructose-6-phosphate amidotransferase [Escherichia coli O157:H7 EDL93... gi\|208734215, gi... - gi\|208812938\|ref\|ZP_03254267.1\| glutamine-fructose-6-phosphate transaminase [Escherichia coli O157:H... GLMS_ECO57 - Glutamine--fructose-6-phosphate aminotransferase [isomerizing] OS=Escherichia coli O157:H7 GN=glmS P... gi\|208739668, gi... - gi\|208819545\|ref\|ZP_03259865.1\| glutamine-fructose-6-phosphate transaminase [Escherichia coli O157:H... gi\|187771681, gi... - gi\|187771681\|gb\|EDU35525.1\| glutamine-fructose-6-phosphate transaminase (isomerizing) [Escherichia c... gi\|189002421, gi... - gi\|189002421\|gb\|EDU71407.1\| glutamine-fructose-6-phosphate transaminase [Escherichia coli O157:H7 st... gi\|189373264, gi... - gi\|189373264\|gb\|EDU91680.1\| glutamine-fructose-6-phosphate transaminase [Escherichia coli O157:H7 st... gi\|189378781, gi... - gi\|189378781\|gb\|EDU97197.1\| glutamine-fructose-6-phosphate transaminase [Escherichia coli O157:H7 st... gi\|168748541, gi... - gi\|188016915\|gb\|EDU55037.1\| glutamine-fructose-6-phosphate transaminase [Escherichia coli O157:H7 st... gi\|254795735, gi... - gi\|254795735\|ref\|YP_003080572.1\| L-glutamine:D-fructose-6-phosphate aminotransferase [Escherichia co... gi\|168753631, gi... - gi\|189359185\|gb\|EDU77604.1\| glutamine-fructose-6-phosphate transaminase [Escherichia coli O157:H7 st... gi\|168759929, gi... - gi\|189369471\|gb\|EDU87887.1\| glutamine-fructose-6-phosphate transaminase [Escherichia coli O157:H7 st... gi\|168766229, gi... - gi\|189364600\|gb\|EDU83019.1\| glutamine-fructose-6-phosphate transaminase [Escherichia coli O157:H7 st...	570.0	[0..1]	[609..1]
gi\|73671334\|gb\|A... - GlmS variant [Escherichia coli] gi\|73671334 - gi\|73671334\|gb\|AAZ80078.1\| GlmS variant [Escherichia coli]	570.0	[0..1]	[609..1]

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Predicted Domain #1

Region A:
Residues: [1-609]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCGIVGAVAQ RDVAEILVEG LRRLEYRGYD SAGVAVIHNG ELNRTRRVGK VQELSAALET  60
   61 DPLAGGTGIA HTRWATHGEP SERNAHPHLS EGDIAVVHNG IIENHHKLRE MLKEHGYHFS 120
  121 SDTDTEVICH LVHHQLKTND SLLAAVQATV KQLEGAYGTV VIDRRDSERM VVARSGSPLV 180
  181 IGFGLGENFV ASDQLALLPV TRSFAFLEEG DVAEVTRRTV SIFDVHGNKV EREVKESEIT 240
  241 HDAGDKGEYR HYMLKEIYEQ PLALTRTIEG RIANKQVLDT AFGDNAAEFL KDIKHVQIIA 300
  301 CGTSYHAGMA ARYWLEDWAG VSCNVEIASE FRYRKSHLFP NSLLVTISQS GETADTLAAM 360
  361 RLAKEMGYKA TLTICNAPGS SLVRESDMAY MMKAGAEIGV ASTKAFTVQL AGLLMLTAVI 420
  421 GRHNGMSEQM QAEITQSLQS MPAKVEQALG LDDAIAELAE DFADKHHALF LGRGDQYPIA 480
  481 MEGALKLKEI SYIHAEAYAS GELKHGPLAL IDADMPVIVV APNNELLEKL KSNVEEVRAR 540
  541 GGLMYVFADV DAEFESDDTM KVIPVPHCDI FMAPLIYTIP LQLLSYHVAL IKGTDVDQPR 600
  601 NLAKSVTVE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	162.0
Match:	1jxaA
Description:	"Isomerase domain" of glucosamine 6-phosphate synthase (GLMS); Glucosamine 6-phosphate synthase, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
glutamine-fructose-6-phosphate transaminase (isomerizing) activity	4.12465195642555	bayes_pls_golite062009
glucose-6-phosphate isomerase activity	2.74527495029339	bayes_pls_golite062009
D-sedoheptulose 7-phosphate isomerase activity	2.03357282678145	bayes_pls_golite062009
intramolecular oxidoreductase activity	1.99606027864666	bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting aldoses and ketoses	1.49939040101274	bayes_pls_golite062009
sugar binding	1.40175307923331	bayes_pls_golite062009
peptidase activity	1.34295853726897	bayes_pls_golite062009
catalytic activity	1.19663085909195	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	1.16226272745141	bayes_pls_golite062009
isomerase activity	0.875614547872629	bayes_pls_golite062009
nucleic acid binding	0.798789250029517	bayes_pls_golite062009
endopeptidase activity	0.759765292911898	bayes_pls_golite062009
binding	0.541510243044181	bayes_pls_golite062009
transferase activity	0.526806728662348	bayes_pls_golite062009
transferase activity, transferring nitrogenous groups	0.329741341879618	bayes_pls_golite062009
transaminase activity	0.307877519336205	bayes_pls_golite062009
carbohydrate binding	0.0870260775261698	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: