YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|24373368, gi|...
Organism: Shewanella oneidensis MR-1
Length: 296 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373368, gi|....

Description E-value Query
Range
Subject
Range
gi|150390667, gi... - gi|77683645|ref|ZP_00799091.1| Binding-protein-dependent transport systems inner membrane component ...
228.0 [0..5] [294..18]
gi|10172642, gi|... - gi|15612593|ref|NP_240896.1| oligopeptide ABC transporter (permease) [Bacillus halodurans C-125], gi...
gi|25296705 - pir||F83653 oligopeptide ABC transporter (permease) BH0030 [imported] - Bacillus halodurans (strain ...
223.0 [0..3] [294..13]
DPPC_BACPE - Dipeptide transport system permease protein DppC OS=Bacillus pseudofirmus (strain OF4) GN=dppC PE=3 ...
gi|11277274, gi|... - gi|1813497|gb|AAB41690.1| dipeptide transporter protein DppC [Bacillus firmus], pir||T44637 dipeptid...
DPPC_BACPF - Dipeptide transport system permease protein dppC OS=Bacillus pseudofirmus GN=dppC PE=3 SV=1
222.0 [0..1] [294..10]
gi|78356230, gi|... - gi|78356230|ref|YP_387679.1| putative permease of ABC transporter [Desulfovibrio desulfuricans subsp...
220.0 [0..1] [294..5]
gi|158140582, gi... - gi|158320383|ref|YP_001512890.1| binding-protein-dependent transport systems inner membrane componen...
219.0 [0..14] [294..26]
gi|86163792, gi|... - gi|87120954|ref|ZP_01076846.1| dipeptide transport system permease protein 2 [Marinomonas sp. MED121...
219.0 [0..9] [294..23]
gi|23100522, gi|... - gi|23100522|ref|NP_693989.1| oligopeptide ABC transporter permease [Oceanobacillus iheyensis HTE831]...
218.0 [0..2] [294..11]
gi|56378846, gi|... - gi|56419004|ref|YP_146322.1| dipeptide ABC transporter (permease) [Geobacillus kaustophilus HTA426],...
218.0 [0..2] [294..10]
gi|110620064, gi... - gi|147921516|ref|YP_684668.1| putative ABC-type peptide transport system, permease component 2 [uncu...
217.0 [0..17] [295..34]

Back

Predicted Domain #1
Region A:
Residues: [1-84]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPVKIYQED QIASPMMRVW QNFSANPFAL AGLWTIAFLL LLTLFGPLIA PFAPEAQDPR  60
   61 ALLLPPSWDP SGTVSHFLGT DDLG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [85-296]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RDIFSRLLHG AHLTFGMALM IVGTALFTGF IIGSLSGMMR GLKSSILGHL LDALLSIPSL  60
   61 LMAILVVAVM GPGLENVFWA VGIALTPQFV RSIHQSVHEE LQKEYVTAAR LDGANSIQIF 120
  121 WYVIMPNVWE VVIIQTTLAI SAAILDIAAL GFLSLGAQAP SPEWGAMVAQ GMDNLLTAPW 180
  181 TVTIPGLAIL FSVLAINLVG DGLRSALAPI RN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.69897
Match: 2onkC
Description: No description for 2onkC was found.

Predicted functions:

Term Confidence Notes
ATPase activity, coupled to transmembrane movement of substances 7.98776119907207 bayes_pls_golite062009
ATPase activity, coupled to movement of substances 7.98726234902655 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances 7.98726234902655 bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity 7.97287417765536 bayes_pls_golite062009
primary active transmembrane transporter activity 7.96249144456164 bayes_pls_golite062009
active transmembrane transporter activity 7.8678894318504 bayes_pls_golite062009
ATPase activity, coupled 7.29227234008448 bayes_pls_golite062009
ATPase activity 6.94069583578738 bayes_pls_golite062009
nucleoside-triphosphatase activity 6.59903874016214 bayes_pls_golite062009
pyrophosphatase activity 6.52169210550643 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 6.50067149801529 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 6.5003333073452 bayes_pls_golite062009
hydrolase activity 4.78607811092587 bayes_pls_golite062009
transporter activity 4.47791794099048 bayes_pls_golite062009
transmembrane transporter activity 4.39634414867723 bayes_pls_golite062009
substrate-specific transporter activity 3.91409799494188 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 3.86345398417242 bayes_pls_golite062009
ion transmembrane transporter activity 2.70116960945763 bayes_pls_golite062009
sugar transmembrane transporter activity 2.67115360425434 bayes_pls_golite062009
maltose-transporting ATPase activity 2.14010989459818 bayes_pls_golite062009
oligosaccharide-transporting ATPase activity 2.14010989459818 bayes_pls_golite062009
oligosaccharide transmembrane transporter activity 2.14010989459818 bayes_pls_golite062009
disaccharide transmembrane transporter activity 2.09224118357857 bayes_pls_golite062009
alpha-glucoside transmembrane transporter activity 2.09224118357857 bayes_pls_golite062009
maltose transmembrane transporter activity 2.09224118357857 bayes_pls_golite062009
glucoside transmembrane transporter activity 2.04706530621258 bayes_pls_golite062009
cation transmembrane transporter activity 1.82526327874202 bayes_pls_golite062009
anion transmembrane-transporting ATPase activity 1.56112505527856 bayes_pls_golite062009
sulfate transmembrane-transporting ATPase activity 1.00737155315764 bayes_pls_golite062009
secondary active transmembrane transporter activity 0.96228415837358 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions 0.69074662322395 bayes_pls_golite062009
solute:cation symporter activity 0.483541714040201 bayes_pls_golite062009
symporter activity 0.483541714040201 bayes_pls_golite062009
catalytic activity 0.427775057748038 bayes_pls_golite062009
anion transmembrane transporter activity 0.38505555521505 bayes_pls_golite062009
inorganic anion transmembrane transporter activity 0.171737154712589 bayes_pls_golite062009
maltooligosaccharide-importing ATPase activity 0.16532450344344 bayes_pls_golite062009
metal ion transmembrane transporter activity 0.14639856424105 bayes_pls_golite062009
carbohydrate transmembrane transporter activity 0.0202682073710961 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle