| Protein: | LAM1_YEAST |
| Organism: | Saccharomyces cerevisiae S288c |
| Length: | 1228 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LAM1_YEAST.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1228] | [1..1228] |
|
|
0.0 | [10..801] | [14..804] |
|
|
2.0E-83 | [498..743] | [1..235] |
|
|
3.0E-70 | [25..556] | [18..502] |
|
|
6.0E-67 | [18..457] | [6..457] |
|
Region A: Residues: [1-113] |
1 11 21 31 41 51
| | | | | |
1 MHEHKAELRL ITVALNEAST DSPSFRASVN YFHTRMESLS SWMHSTVDYV ENTYKPSFQD 60
61 FQRIKETLFS QLLPSPILLS NGFVSNQPYT PLLVRDFTRD VSDLSNTVMK IIL
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| protein binding | 3.17213698546013 | bayes_pls_golite062009 |
| binding | 2.86147407357315 | bayes_pls_golite062009 |
| transcription regulator activity | 1.50756932992573 | bayes_pls_golite062009 |
| nucleic acid binding | 1.2749362891779 | bayes_pls_golite062009 |
| DNA binding | 1.18878662922624 | bayes_pls_golite062009 |
| protein domain specific binding | 0.236765394237244 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.198922924806251 | bayes_pls_golite062009 |
|
Region A: Residues: [114-189] |
1 11 21 31 41 51
| | | | | |
1 GDENSQYTAA LSALSSDAIN PYFNKRKTFE YYQRKYDSFL TDFLAATNDG NTLIPQNLQN 60
61 ETFKLVDIKH KYIEAS
|
| Detection Method: | |
| Confidence: | 14.0 |
| Match: | 1pbv__ |
| Description: | Exchange factor ARNO |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.95502209146398 | bayes_pls_golite062009 |
| DNA binding | 4.49877554292304 | bayes_pls_golite062009 |
| nucleic acid binding | 4.4138116788102 | bayes_pls_golite062009 |
| transcription factor activity | 3.78905634607011 | bayes_pls_golite062009 |
| transcription activator activity | 3.19708783401986 | bayes_pls_golite062009 |
| binding | 3.09940998297931 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.07549097279613 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.10135825467854 | bayes_pls_golite062009 |
| protein binding | 1.80415286835431 | bayes_pls_golite062009 |
| transcription repressor activity | 1.72704408652215 | bayes_pls_golite062009 |
| transcription factor binding | 0.35726633913804 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.18158516638045 | bayes_pls_golite062009 |
|
Region A: Residues: [190-296] |
1 11 21 31 41 51
| | | | | |
1 LDLTEAISLM KVNLDKFLIE TIDIVRKNNV ITTKDTKDVI DITPELTETL KDWTDWIESN 60
61 LQTLQALSSK LSEAKYAILK LSLARMKPSR LIQDYDLKSI QNLKFNL
|
| Detection Method: | |
| Confidence: | 14.0 |
| Match: | 1pbv__ |
| Description: | Exchange factor ARNO |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [297-467] |
1 11 21 31 41 51
| | | | | |
1 PKSISNGNNS EEKGLSGWLY MKTTVGHDPK RVVWVRRWCF LQNNVFGVFS LSPSKTYVEE 60
61 TDKFGILWIT VEYLPKEPRN FCFKLRIQNP NCKTEEENTY IDIILQAESI DELKSWINTL 120
121 TSHKRIALSI KEENDPRYQL ARKKIEPQFF EFASSSSTST DKLLTSFSSK T
|
| Detection Method: | |
| Confidence: | 18.0 |
| Match: | 1eazA_ |
| Description: | Tapp1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [468-571] |
1 11 21 31 41 51
| | | | | |
1 LTLVEELKKN YMSEDDIYSI IDNKAYHLRV ISTPIATQLT HLALFSTFLS VSNYYPCATQ 60
61 ANTWGTANWN DLSYLVNPLK GSSVHKPATV SNSSRFSVSY PDYY
|
| Detection Method: | |
| Confidence: | 2.39794 |
| Match: | 1dcqA_ |
| Description: | Pyk2-associated protein beta; Pyk2-associated protein beta ARF-GAP domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [572-1228] |
1 11 21 31 41 51
| | | | | |
1 PYSLKVDDIQ FRSIFFSVNH DFLQVPKELV LLRYSSVWCP NNKQKFASMA FVTLNHIYVY 60
61 LNISGFSYLR RIDLLDIDSI EYDKSPKHVS SRMLHMQRGD GLRFNMSVFF TDRRAVASKL 120
121 QFLIENKAMH IPKGEKEVLE IFQELDEEIE NEKKIIKDNL SESEHYSKDY DYLLKSTYDH 180
181 HFENTNETPM ELMSRKLRLE REAWCYFQDN FKVGSKTLFH VLFGDKSQVF PSSLFLCKKG 240
241 SNLNNNSYWE RIRRAKEDAS CQFELCRKLQ FQLNRTSNFI KDLLWLKDDN DNFKLVLQQR 300
301 VTKIKQGYYF EVEEGPIIVK FPLCHPLLLR VRFIIAECIT SQGESLKKCD LAILYDFNYV 360
361 ESIDKLNTKV EKLWLFERIH LNWALRYCKL EHSEINRKTR EYLKKFNDRE KMSDVIKLCG 420
421 FLGVLPKERI ENDEKAGDFM QPVYINYDFL SLSKIFTKLT VFYLSSVIIK TMKVLLAMVM 480
481 VIFKCFSKVN KTLYYCLLIS AVTNLFFVGK SIHSYFSVKS AETLFQNYAN GDQRGLQIMH 540
541 RSLTVPDLNL LTRKMMDNDQ ENPVFKRFDE DKNAYQYKGT RQEIAIKRNQ VLTELKILQN 600
601 TEKELVQGSY RKFIITERDK CITTQNEIFD LWINDTKLQD YCMACFAEYN RLSAIPV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
