Protein: | LAM1_YEAST |
Organism: | Saccharomyces cerevisiae S288c |
Length: | 1228 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LAM1_YEAST.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..1228] | [1..1228] |
|
0.0 | [10..801] | [14..804] |
|
2.0E-83 | [498..743] | [1..235] |
|
3.0E-70 | [25..556] | [18..502] |
|
6.0E-67 | [18..457] | [6..457] |
Region A: Residues: [1-113] |
1 11 21 31 41 51 | | | | | | 1 MHEHKAELRL ITVALNEAST DSPSFRASVN YFHTRMESLS SWMHSTVDYV ENTYKPSFQD 60 61 FQRIKETLFS QLLPSPILLS NGFVSNQPYT PLLVRDFTRD VSDLSNTVMK IIL |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
View | Download | 0.727 | 0.389 | mitochondrion | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
View | Download | 0.697 | 0.001 | mitochondrion | a.47.2 | t-snare proteins |
View | Download | 0.680 | 0.001 | mitochondrion | a.7.7 | BAG domain |
View | Download | 0.723 | 0.000 | mitochondrion | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.681 | N/A | N/A | a.112.1 | Description not found. |
View | Download | 0.668 | N/A | N/A | a.24.2 | Aspartate receptor, ligand-binding domain |
View | Download | 0.661 | N/A | N/A | a.24.14 | FAT domain of focal adhesion kinase |
View | Download | 0.647 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.612 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
View | Download | 0.595 | N/A | N/A | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
View | Download | 0.591 | N/A | N/A | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
View | Download | 0.581 | N/A | N/A | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
View | Download | 0.571 | N/A | N/A | a.47.2 | t-snare proteins |
View | Download | 0.555 | N/A | N/A | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
View | Download | 0.552 | N/A | N/A | a.7.5 | Tubulin chaperone cofactor A |
View | Download | 0.544 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.520 | N/A | N/A | a.24.4 | Hemerythrin |
View | Download | 0.499 | N/A | N/A | a.7.7 | BAG domain |
View | Download | 0.470 | N/A | N/A | a.22.1 | Histone-fold |
View | Download | 0.460 | N/A | N/A | a.60.10 | Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain |
View | Download | 0.453 | N/A | N/A | a.7.6 | Ribosomal protein S20 |
View | Download | 0.446 | N/A | N/A | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
View | Download | 0.439 | N/A | N/A | a.22.1 | Histone-fold |
View | Download | 0.438 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.432 | N/A | N/A | a.7.8 | GAT domain |
View | Download | 0.415 | N/A | N/A | a.118.7 | 14-3-3 protein |
View | Download | 0.407 | N/A | N/A | f.25.1 | Cytochrome c oxidase subunit III-like |
View | Download | 0.399 | N/A | N/A | d.58.19 | Bacterial exopeptidase dimerisation domain |
View | Download | 0.397 | N/A | N/A | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
View | Download | 0.396 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.391 | N/A | N/A | a.26.1 | 4-helical cytokines |
View | Download | 0.389 | N/A | N/A | a.2.1 | GreA transcript cleavage protein, N-terminal domain |
View | Download | 0.382 | N/A | N/A | a.7.1 | Spectrin repeat |
View | Download | 0.380 | N/A | N/A | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
View | Download | 0.378 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.373 | N/A | N/A | a.24.3 | Cytochromes |
View | Download | 0.365 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
View | Download | 0.354 | N/A | N/A | f.1.3 | delta-Endotoxin (insectocide), N-terminal domain |
View | Download | 0.352 | N/A | N/A | f.18.1 | F1F0 ATP synthase subunit A |
View | Download | 0.351 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
View | Download | 0.348 | N/A | N/A | a.25.1 | Ferritin-like |
View | Download | 0.348 | N/A | N/A | a.26.1 | 4-helical cytokines |
View | Download | 0.345 | N/A | N/A | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
View | Download | 0.345 | N/A | N/A | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
View | Download | 0.344 | N/A | N/A | a.24.4 | Hemerythrin |
View | Download | 0.340 | N/A | N/A | f.17.2 | Cytochrome c oxidase subunit II-like, transmembrane region |
View | Download | 0.340 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.338 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
View | Download | 0.337 | N/A | N/A | f.14.1 | Voltage-gated potassium channels |
View | Download | 0.335 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
View | Download | 0.334 | N/A | N/A | a.24.17 | Group V grass pollen allergen |
View | Download | 0.331 | N/A | N/A | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
View | Download | 0.327 | N/A | N/A | a.47.2 | t-snare proteins |
View | Download | 0.327 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
View | Download | 0.326 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.322 | N/A | N/A | a.26.1 | 4-helical cytokines |
View | Download | 0.317 | N/A | N/A | a.47.2 | t-snare proteins |
View | Download | 0.317 | N/A | N/A | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
View | Download | 0.316 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
View | Download | 0.311 | N/A | N/A | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
View | Download | 0.309 | N/A | N/A | a.24.3 | Cytochromes |
View | Download | 0.307 | N/A | N/A | a.7.8 | GAT domain |
View | Download | 0.302 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
View | Download | 0.300 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
View | Download | 0.300 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.296 | N/A | N/A | a.19.1 | Fertilization protein |
View | Download | 0.294 | N/A | N/A | a.26.1 | 4-helical cytokines |
View | Download | 0.293 | N/A | N/A | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
View | Download | 0.293 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
View | Download | 0.292 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
View | Download | 0.292 | N/A | N/A | a.7.8 | GAT domain |
View | Download | 0.292 | N/A | N/A | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
View | Download | 0.290 | N/A | N/A | a.112.1 | Description not found. |
View | Download | 0.289 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.288 | N/A | N/A | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
View | Download | 0.288 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
View | Download | 0.286 | N/A | N/A | b.88.1 | Mss4-like |
View | Download | 0.284 | N/A | N/A | b.40.4 | Nucleic acid-binding proteins |
View | Download | 0.281 | N/A | N/A | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
View | Download | 0.279 | N/A | N/A | a.7.5 | Tubulin chaperone cofactor A |
View | Download | 0.279 | N/A | N/A | f.1.3 | delta-Endotoxin (insectocide), N-terminal domain |
View | Download | 0.278 | N/A | N/A | d.96.1 | Tetrahydrobiopterin biosynthesis enzymes-like |
View | Download | 0.277 | N/A | N/A | b.88.1 | Mss4-like |
View | Download | 0.277 | N/A | N/A | a.22.1 | Histone-fold |
View | Download | 0.277 | N/A | N/A | a.24.1 | Apolipoprotein |
View | Download | 0.276 | N/A | N/A | a.7.1 | Spectrin repeat |
View | Download | 0.276 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
View | Download | 0.274 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.274 | N/A | N/A | a.130.1 | Chorismate mutase II |
View | Download | 0.270 | N/A | N/A | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
View | Download | 0.269 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
View | Download | 0.267 | N/A | N/A | a.24.14 | FAT domain of focal adhesion kinase |
View | Download | 0.263 | N/A | N/A | a.123.1 | Nuclear receptor ligand-binding domain |
View | Download | 0.262 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.262 | N/A | N/A | a.2.7 | tRNA-binding arm |
View | Download | 0.259 | N/A | N/A | a.41.1 | Domain of poly(ADP-ribose) polymerase |
View | Download | 0.252 | N/A | N/A | f.14.1 | Voltage-gated potassium channels |
View | Download | 0.250 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
View | Download | 0.248 | N/A | N/A | b.88.1 | Mss4-like |
View | Download | 0.247 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.247 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
View | Download | 0.247 | N/A | N/A | a.7.6 | Ribosomal protein S20 |
View | Download | 0.246 | N/A | N/A | a.7.7 | BAG domain |
View | Download | 0.246 | N/A | N/A | f.14.1 | Voltage-gated potassium channels |
View | Download | 0.243 | N/A | N/A | a.149.1 | RNase III endonuclease catalytic domain |
View | Download | 0.242 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
View | Download | 0.242 | N/A | N/A | f.14.1 | Voltage-gated potassium channels |
View | Download | 0.241 | N/A | N/A | a.77.1 | DEATH domain |
View | Download | 0.241 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.241 | N/A | N/A | a.2.7 | tRNA-binding arm |
View | Download | 0.240 | N/A | N/A | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
View | Download | 0.239 | N/A | N/A | a.47.2 | t-snare proteins |
View | Download | 0.239 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
View | Download | 0.238 | N/A | N/A | a.40.1 | Calponin-homology domain, CH-domain |
View | Download | 0.237 | N/A | N/A | d.8.1 | Urease, gamma-subunit |
View | Download | 0.237 | N/A | N/A | a.47.2 | t-snare proteins |
View | Download | 0.235 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
View | Download | 0.235 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
View | Download | 0.235 | N/A | N/A | a.112.1 | Description not found. |
View | Download | 0.234 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
View | Download | 0.231 | N/A | N/A | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
View | Download | 0.229 | N/A | N/A | a.24.17 | Group V grass pollen allergen |
View | Download | 0.227 | N/A | N/A | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
View | Download | 0.226 | N/A | N/A | a.7.1 | Spectrin repeat |
View | Download | 0.225 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.225 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
View | Download | 0.223 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.222 | N/A | N/A | a.7.8 | GAT domain |
View | Download | 0.220 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.220 | N/A | N/A | c.114.1 | YchN-like |
View | Download | 0.220 | N/A | N/A | a.22.1 | Histone-fold |
View | Download | 0.219 | N/A | N/A | a.7.5 | Tubulin chaperone cofactor A |
View | Download | 0.219 | N/A | N/A | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
View | Download | 0.217 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
View | Download | 0.217 | N/A | N/A | a.7.5 | Tubulin chaperone cofactor A |
View | Download | 0.217 | N/A | N/A | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
View | Download | 0.216 | N/A | N/A | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
View | Download | 0.214 | N/A | N/A | a.29.2 | Bromodomain |
View | Download | 0.214 | N/A | N/A | a.48.1 | N-terminal domain of cbl (N-cbl) |
View | Download | 0.214 | N/A | N/A | a.63.1 | Apolipophorin-III |
View | Download | 0.213 | N/A | N/A | a.1.1 | Globin-like |
View | Download | 0.211 | N/A | N/A | a.46.1 | Methionine synthase domain |
View | Download | 0.211 | N/A | N/A | a.19.1 | Fertilization protein |
View | Download | 0.209 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.209 | N/A | N/A | f.14.1 | Voltage-gated potassium channels |
View | Download | 0.209 | N/A | N/A | a.19.1 | Fertilization protein |
View | Download | 0.209 | N/A | N/A | a.19.1 | Fertilization protein |
View | Download | 0.207 | N/A | N/A | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
View | Download | 0.207 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
View | Download | 0.206 | N/A | N/A | a.19.1 | Fertilization protein |
View | Download | 0.201 | N/A | N/A | a.7.7 | BAG domain |
Term | Confidence | Notes |
protein binding | 3.17213698546013 | bayes_pls_golite062009 |
binding | 2.86147407357315 | bayes_pls_golite062009 |
transcription regulator activity | 1.50756932992573 | bayes_pls_golite062009 |
nucleic acid binding | 1.2749362891779 | bayes_pls_golite062009 |
DNA binding | 1.18878662922624 | bayes_pls_golite062009 |
protein domain specific binding | 0.236765394237244 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 0.198922924806251 | bayes_pls_golite062009 |
Region A: Residues: [114-189] |
1 11 21 31 41 51 | | | | | | 1 GDENSQYTAA LSALSSDAIN PYFNKRKTFE YYQRKYDSFL TDFLAATNDG NTLIPQNLQN 60 61 ETFKLVDIKH KYIEAS |
Detection Method: | ![]() |
Confidence: | 14.0 |
Match: | 1pbv__ |
Description: | Exchange factor ARNO |
Matching Structure (courtesy of the PDB):![]() |
Term | Confidence | Notes |
transcription regulator activity | 4.95502209146398 | bayes_pls_golite062009 |
DNA binding | 4.49877554292304 | bayes_pls_golite062009 |
nucleic acid binding | 4.4138116788102 | bayes_pls_golite062009 |
transcription factor activity | 3.78905634607011 | bayes_pls_golite062009 |
transcription activator activity | 3.19708783401986 | bayes_pls_golite062009 |
binding | 3.09940998297931 | bayes_pls_golite062009 |
sequence-specific DNA binding | 3.07549097279613 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 2.10135825467854 | bayes_pls_golite062009 |
protein binding | 1.80415286835431 | bayes_pls_golite062009 |
transcription repressor activity | 1.72704408652215 | bayes_pls_golite062009 |
transcription factor binding | 0.35726633913804 | bayes_pls_golite062009 |
specific RNA polymerase II transcription factor activity | 0.18158516638045 | bayes_pls_golite062009 |
Region A: Residues: [190-296] |
1 11 21 31 41 51 | | | | | | 1 LDLTEAISLM KVNLDKFLIE TIDIVRKNNV ITTKDTKDVI DITPELTETL KDWTDWIESN 60 61 LQTLQALSSK LSEAKYAILK LSLARMKPSR LIQDYDLKSI QNLKFNL |
Detection Method: | ![]() |
Confidence: | 14.0 |
Match: | 1pbv__ |
Description: | Exchange factor ARNO |
Matching Structure (courtesy of the PDB):![]() |
Region A: Residues: [297-467] |
1 11 21 31 41 51 | | | | | | 1 PKSISNGNNS EEKGLSGWLY MKTTVGHDPK RVVWVRRWCF LQNNVFGVFS LSPSKTYVEE 60 61 TDKFGILWIT VEYLPKEPRN FCFKLRIQNP NCKTEEENTY IDIILQAESI DELKSWINTL 120 121 TSHKRIALSI KEENDPRYQL ARKKIEPQFF EFASSSSTST DKLLTSFSSK T |
Detection Method: | ![]() |
Confidence: | 18.0 |
Match: | 1eazA_ |
Description: | Tapp1 |
Matching Structure (courtesy of the PDB):![]() |
Region A: Residues: [468-571] |
1 11 21 31 41 51 | | | | | | 1 LTLVEELKKN YMSEDDIYSI IDNKAYHLRV ISTPIATQLT HLALFSTFLS VSNYYPCATQ 60 61 ANTWGTANWN DLSYLVNPLK GSSVHKPATV SNSSRFSVSY PDYY |
Detection Method: | ![]() |
Confidence: | 2.39794 |
Match: | 1dcqA_ |
Description: | Pyk2-associated protein beta; Pyk2-associated protein beta ARF-GAP domain |
Matching Structure (courtesy of the PDB):![]() |
Region A: Residues: [572-1228] |
1 11 21 31 41 51 | | | | | | 1 PYSLKVDDIQ FRSIFFSVNH DFLQVPKELV LLRYSSVWCP NNKQKFASMA FVTLNHIYVY 60 61 LNISGFSYLR RIDLLDIDSI EYDKSPKHVS SRMLHMQRGD GLRFNMSVFF TDRRAVASKL 120 121 QFLIENKAMH IPKGEKEVLE IFQELDEEIE NEKKIIKDNL SESEHYSKDY DYLLKSTYDH 180 181 HFENTNETPM ELMSRKLRLE REAWCYFQDN FKVGSKTLFH VLFGDKSQVF PSSLFLCKKG 240 241 SNLNNNSYWE RIRRAKEDAS CQFELCRKLQ FQLNRTSNFI KDLLWLKDDN DNFKLVLQQR 300 301 VTKIKQGYYF EVEEGPIIVK FPLCHPLLLR VRFIIAECIT SQGESLKKCD LAILYDFNYV 360 361 ESIDKLNTKV EKLWLFERIH LNWALRYCKL EHSEINRKTR EYLKKFNDRE KMSDVIKLCG 420 421 FLGVLPKERI ENDEKAGDFM QPVYINYDFL SLSKIFTKLT VFYLSSVIIK TMKVLLAMVM 480 481 VIFKCFSKVN KTLYYCLLIS AVTNLFFVGK SIHSYFSVKS AETLFQNYAN GDQRGLQIMH 540 541 RSLTVPDLNL LTRKMMDNDQ ENPVFKRFDE DKNAYQYKGT RQEIAIKRNQ VLTELKILQN 600 601 TEKELVQGSY RKFIITERDK CITTQNEIFD LWINDTKLQD YCMACFAEYN RLSAIPV |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.