YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|23100522, gi\|...
Organism:	Oceanobacillus iheyensis HTE831
Length:	300 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23100522, gi|....

Description	E-value	Query Range	Subject Range
gi\|10172642, gi\|... - gi\|15612593\|ref\|NP_240896.1\| oligopeptide ABC transporter (permease) [Bacillus halodurans C-125], gi... gi\|25296705 - pir\|\|F83653 oligopeptide ABC transporter (permease) BH0030 [imported] - Bacillus halodurans (strain ...	230.0	[0..1]	[299..1]
gi\|150390667, gi... - gi\|77683645\|ref\|ZP_00799091.1\| Binding-protein-dependent transport systems inner membrane component ...	230.0	[0..1]	[299..1]
DPPC_BACPE - Dipeptide transport system permease protein DppC OS=Bacillus pseudofirmus (strain OF4) GN=dppC PE=3 ... gi\|11277274, gi\|... - gi\|1813497\|gb\|AAB41690.1\| dipeptide transporter protein DppC [Bacillus firmus], pir\|\|T44637 dipeptid... DPPC_BACPF - Dipeptide transport system permease protein dppC OS=Bacillus pseudofirmus GN=dppC PE=3 SV=1	222.0	[0..4]	[299..8]
gi\|56378846, gi\|... - gi\|56419004\|ref\|YP_146322.1\| dipeptide ABC transporter (permease) [Geobacillus kaustophilus HTA426],...	220.0	[0..6]	[299..5]
gi\|158140582, gi... - gi\|158320383\|ref\|YP_001512890.1\| binding-protein-dependent transport systems inner membrane componen...	219.0	[0..3]	[299..6]
gi\|134052991, gi... - gi\|88945336\|ref\|ZP_01148513.1\| oligopeptide ABC transporter permease [Desulfotomaculum reducens MI-1...	218.0	[0..6]	[299..2]
gi\|110620064, gi... - gi\|147921516\|ref\|YP_684668.1\| putative ABC-type peptide transport system, permease component 2 [uncu...	216.0	[0..15]	[299..23]
gi\|23099904, gi\|... - gi\|23099904\|ref\|NP_693370.1\| dipeptide ABC transporter permease [Oceanobacillus iheyensis HTE831], g...	215.0	[0..23]	[299..30]
gi\|51974475, gi\|... - gi\|52141006\|ref\|YP_085823.1\| oligopeptide ABC transporter, permease [Bacillus cereus E33L], gi\|51974...	213.0	[0..23]	[300..22]
gi\|165871527, gi... - gi\|165871527\|ref\|ZP_02216174.1\| oligopeptide ABC transporter, oligopeptide-binding protein [Bacillus... gi\|227004588, gi... - gi\|227817276\|ref\|YP_002817285.1\| oligopeptide ABC transporter, oligopeptide-binding protein [Bacillu... gi\|228842552, gi... - gi\|228917134\|ref\|ZP_04080692.1\| Oligopeptide ABC transporter [Bacillus thuringiensis serovar pulsien... gi\|228830122, gi... - gi\|228929543\|ref\|ZP_04092562.1\| Oligopeptide ABC transporter [Bacillus thuringiensis serovar pondich... gi\|228948219, gi... - gi\|228948219\|ref\|ZP_04110503.1\| Oligopeptide ABC transporter [Bacillus thuringiensis serovar monterr... gi\|228689801, gi... - gi\|229093592\|ref\|ZP_04224693.1\| Oligopeptide ABC transporter [Bacillus cereus Rock3-42], gi\|22868980... gi\|228659362, gi... - gi\|229124060\|ref\|ZP_04253252.1\| Oligopeptide ABC transporter [Bacillus cereus 95/8201], gi\|228659362... gi\|229603917, gi... - gi\|229603917\|ref\|YP_002868779.1\| oligopeptide ABC transporter, oligopeptide-binding protein [Bacillu... gi\|254687016 - gi\|254687016\|ref\|ZP_05150874.1\| oligopeptide ABC transporter, oligopeptide-binding protein [Bacillus... gi\|254724578 - gi\|254724578\|ref\|ZP_05186361.1\| oligopeptide ABC transporter, oligopeptide-binding protein [Bacillus... gi\|254736598 - gi\|254736598\|ref\|ZP_05194304.1\| oligopeptide ABC transporter, oligopeptide-binding protein [Bacillus... gi\|21402537, gi\|... - gi\|65321861\|ref\|ZP_00394820.1\| COG1173: ABC-type dipeptide/oligopeptide/nickel transport systems, pe... gi\|167641651, gi... - gi\|167641651\|ref\|ZP_02399896.1\| oligopeptide ABC transporter, oligopeptide-binding protein [Bacillus... gi\|254741636 - gi\|254741636\|ref\|ZP_05199323.1\| oligopeptide ABC transporter, oligopeptide-binding protein [Bacillus... gi\|167529059, gi... - gi\|167635639\|ref\|ZP_02393951.1\| oligopeptide ABC transporter, oligopeptide-binding protein [Bacillus... gi\|254754766 - gi\|254754766\|ref\|ZP_05206801.1\| oligopeptide ABC transporter, oligopeptide-binding protein [Bacillus... gi\|170708357, gi... - gi\|170708357\|ref\|ZP_02898801.1\| oligopeptide ABC transporter, oligopeptide-binding protein [Bacillus... gi\|254757598 - gi\|254757598\|ref\|ZP_05209625.1\| oligopeptide ABC transporter, oligopeptide-binding protein [Bacillus... gi\|170688294, gi... - gi\|170688294\|ref\|ZP_02879504.1\| oligopeptide ABC transporter, oligopeptide-binding protein [Bacillus... gi\|49478664, gi\|... - gi\|49478664\|ref\|YP_038548.1\| oligopeptide transport system, permease [Bacillus thuringiensis serovar... gi\|190562015, gi... - gi\|190567024\|ref\|ZP_03019940.1\| oligopeptide ABC transporter, oligopeptide-binding protein [Bacillus... gi\|49187386, gi\|... - gi\|49187386\|ref\|YP_030638.1\| oligopeptide ABC transporter, oligopeptide-binding protein [Bacillus an... gi\|177653123, gi... - gi\|177653123\|ref\|ZP_02935410.1\| oligopeptide ABC transporter, oligopeptide-binding protein [Bacillus... gi\|47530030, gi\|... - gi\|47530030\|ref\|YP_021379.1\| oligopeptide ABC transporter, oligopeptide-binding protein [Bacillus an... gi\|30259222, gi\|... - gi\|30264564\|ref\|NP_846941.1\| oligopeptide ABC transporter, oligopeptide-binding protein [Bacillus an... gi\|218905721, gi... - gi\|218905721\|ref\|YP_002453555.1\| oligopeptide ABC transporter, oligopeptide-binding protein [Bacillu...	213.0	[0..23]	[300..22]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQPTEHIET PQTAHKPPNP RLKSWKIVFN KFKKNKSAMI GGFLIIFLLI IAIVGPFFTP  60
   61 YEPYEQNIVN KLQSPSAEHW FGTDNFGR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [89-300]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DIFSRVIQGT GLTLTIGFFS IALGATMGVL FGLLAGFYGK RTDSIIMRIM DILLAFPGIL  60
   61 LALAIVTVLG GSIANLIIAV AVSSIPVFAR IVRGSVLSVK NLEYIDAMRA LGASDTRIIF 120
  121 KHIFPNITSP IIVQATLSIA TAILSASGLS FLGLGAQPPS AEWGAMLSDG RNYLYNAGHV 180
  181 ALFPGLAIVV AVLAFNLLGD GLRDAFDPKT KE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.09691
Match:	2onkC
Description:	No description for 2onkC was found.

Predicted functions:

Term	Confidence	Notes
ATPase activity, coupled to transmembrane movement of substances	7.98776119907207	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	7.98726234902655	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	7.98726234902655	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	7.97287417765536	bayes_pls_golite062009
primary active transmembrane transporter activity	7.96249144456164	bayes_pls_golite062009
active transmembrane transporter activity	7.8678894318504	bayes_pls_golite062009
ATPase activity, coupled	7.29227234008448	bayes_pls_golite062009
ATPase activity	6.94069583578738	bayes_pls_golite062009
nucleoside-triphosphatase activity	6.59903874016214	bayes_pls_golite062009
pyrophosphatase activity	6.52169210550643	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	6.50067149801529	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	6.5003333073452	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	5.78398318541319	bayes_pls_golite062009
ion transmembrane transporter activity	5.07829337366931	bayes_pls_golite062009
hydrolase activity	4.78607811092587	bayes_pls_golite062009
transporter activity	4.47791794099048	bayes_pls_golite062009
transmembrane transporter activity	4.39634414867723	bayes_pls_golite062009
cation transmembrane transporter activity	4.35124450289762	bayes_pls_golite062009
substrate-specific transporter activity	3.91409799494188	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	3.2006428628965	bayes_pls_golite062009
metal ion transmembrane transporter activity	2.95360205425391	bayes_pls_golite062009
sugar transmembrane transporter activity	2.67115360425434	bayes_pls_golite062009
iron ion transmembrane transporter activity	2.58662753282402	bayes_pls_golite062009
sulfate transmembrane-transporting ATPase activity	2.56867883684303	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	2.42763030383098	bayes_pls_golite062009
maltose-transporting ATPase activity	2.14010989459818	bayes_pls_golite062009
oligosaccharide-transporting ATPase activity	2.14010989459818	bayes_pls_golite062009
oligosaccharide transmembrane transporter activity	2.14010989459818	bayes_pls_golite062009
maltose transmembrane transporter activity	2.09224118357857	bayes_pls_golite062009
alpha-glucoside transmembrane transporter activity	2.09224118357857	bayes_pls_golite062009
disaccharide transmembrane transporter activity	2.09224118357857	bayes_pls_golite062009
glucoside transmembrane transporter activity	2.04706530621258	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	1.92041789093512	bayes_pls_golite062009
anion transmembrane transporter activity	1.81715503217512	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	1.79613658743425	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	1.74937989644368	bayes_pls_golite062009
secondary active transmembrane transporter activity	0.96228415837358	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	0.798639167073698	bayes_pls_golite062009
sulfate transmembrane transporter activity	0.72950761930647	bayes_pls_golite062009
symporter activity	0.483541714040201	bayes_pls_golite062009
solute:cation symporter activity	0.483541714040201	bayes_pls_golite062009
catalytic activity	0.427775057748038	bayes_pls_golite062009
maltooligosaccharide-importing ATPase activity	0.16532450344344	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	0.0202682073710961	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: