Protein: | ARGR2_YEAST |
Organism: | Saccharomyces cerevisiae S288c |
Length: | 880 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARGR2_YEAST.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..880] | [1..880] |
|
1.0E-37 | [2..192] | [11..231] |
|
1.0E-31 | [2..149] | [35..201] |
|
2.0E-30 | [11..214] | [10..205] |
|
5.0E-30 | [2..149] | [35..200] |
|
2.0E-29 | [3..185] | [58..239] |
|
7.0E-28 | [2..149] | [36..201] |
Region A: Residues: [1-69] |
1 11 21 31 41 51 | | | | | | 1 MGISSKNGPK KMGRAKTFTG CWTCRGRKVK CDLRHPHCQR CEKSNLPCGG YDIKLRWSKP 60 61 MQFDPYGVP |
Detection Method: | |
Confidence: | 46.68867 |
Match: | 1pyiA_ |
Description: | PPR1 |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
binding | 2.91929847152301 | bayes_pls_golite062009 |
transcription regulator activity | 2.7831619208765 | bayes_pls_golite062009 |
DNA binding | 2.61829684541806 | bayes_pls_golite062009 |
nucleic acid binding | 2.43465257824542 | bayes_pls_golite062009 |
transcription factor activity | 1.55251487621784 | bayes_pls_golite062009 |
sequence-specific DNA binding | 0.87785810571597 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 0.83092951524649 | bayes_pls_golite062009 |
specific RNA polymerase II transcription factor activity | 0.79838087621523 | bayes_pls_golite062009 |
Region A: Residues: [70-880] |
1 11 21 31 41 51 | | | | | | 1 IPQNSPATTT NLSGSVDEPQ YQRRNIDFVR YDEEYVYHED MDDELTMLHT PPIEKISDNK 60 61 TWIIKKFGVF KGTDKIDKQY APRKKRNRKR VAKSLESSAS ISLSSLPSSS TISFPIRHIE 120 121 DKLRNKGHVK TGILSANDGV PPTPNLLDYD WNNLNITGYE WISSELRDDA LLSAVTLQGH 180 181 HLGHTQPQEI SLEENSNVVS GEEHVNAKEH GCAFEADNQG SSTLPNKAAS ANDKLYQQNL 240 241 KLLFQKNSSN SEEPDPQALI DDVFVNIEPR SLPASDLNKI TLAPPNEESR MPKSMLELTS 300 301 YSSDLPPELV DIIPKTDLTV HGLARFLLNH YFNNVADKMT VVVLEKNPWK TLYFPRALMA 360 361 LGDLAGLGQS SNSRNALLNA LLAVSCFHLQ SKYPRNYKLQ KYFLGLGIEL RNQASNFLRL 420 421 CLNTKSSIPE KYKDVLTAIL SMNSIDVVWG TMADCQDHLA LCEDFVESRM KLRPNISEKT 480 481 KTLHRIFSFL KLIQDSTALD KVRAKEIVIL PSEEDDNYKP LDTSNATTSS SEPRVDVVQE 540 541 GLFREALNEN DGKIHIEFVK EPITNVSADS TPSSTTPPIF TNIATESYYN KSDISKLVSK 600 601 TDENIIGTDS LYGLPNSLIL LFSDCVRIVR HNEYYNLTYL PVPRKFNELS LNFEKRLLKW 660 661 KSEWNFHQEN SEGKSFINST AEALYHHTMS FYFSLIIYYF TMARSLNCQF LQNYVAKVLD 720 721 HLNAMEELVD QKKVKIVPLI WQGFMAGCAC TDENRQQEFR RWAAKLAESG VGSYWGARQV 780 781 MLEVWRRRKE DEPGDNWYSV YKDWEMNLML S |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [205-295] |
1 11 21 31 41 51 | | | | | | 1 ANDGVPPTPN LLDYDWNNLN ITGYEWISSE LRDDALLSAV TLQGHHLGHT QPQEISLEEN 60 61 SNVVSGEEHV NAKEHGCAFE ADNQGSSTLP N |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [296-355] |
1 11 21 31 41 51 | | | | | | 1 KAASANDKLY QQNLKLLFQK NSSNSEEPDP QALIDDVFVN IEPRSLPASD LNKITLAPPN 60 61 |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [356-580] |
1 11 21 31 41 51 | | | | | | 1 EESRMPKSML ELTSYSSDLP PELVDIIPKT DLTVHGLARF LLNHYFNNVA DKMTVVVLEK 60 61 NPWKTLYFPR ALMALGDLAG LGQSSNSRNA LLNALLAVSC FHLQSKYPRN YKLQKYFLGL 120 121 GIELRNQASN FLRLCLNTKS SIPEKYKDVL TAILSMNSID VVWGTMADCQ DHLALCEDFV 180 181 ESRMKLRPNI SEKTKTLHRI FSFLKLIQDS TALDKVRAKE IVILP |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [581-671] |
1 11 21 31 41 51 | | | | | | 1 SEEDDNYKPL DTSNATTSSS EPRVDVVQEG LFREALNEND GKIHIEFVKE PITNVSADST 60 61 PSSTTPPIFT NIATESYYNK SDISKLVSKT D |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [672-880] |
1 11 21 31 41 51 | | | | | | 1 ENIIGTDSLY GLPNSLILLF SDCVRIVRHN EYYNLTYLPV PRKFNELSLN FEKRLLKWKS 60 61 EWNFHQENSE GKSFINSTAE ALYHHTMSFY FSLIIYYFTM ARSLNCQFLQ NYVAKVLDHL 120 121 NAMEELVDQK KVKIVPLIWQ GFMAGCACTD ENRQQEFRRW AAKLAESGVG SYWGARQVML 180 181 EVWRRRKEDE PGDNWYSVYK DWEMNLMLS |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.