YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17982691, gi\|...
Organism:	Brucella melitensis bv. 1 str. 16M
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17982691, gi|....

Description	E-value	Query Range	Subject Range
gi\|71730663, gi\|... - gi\|71899534\|ref\|ZP_00681690.1\| Ribosomal protein S12, bacterial and chloroplast form [Xylella fastid...	214.0	[0..5]	[134..35]
gi\|92910094, gi\|... - gi\|92910094\|ref\|ZP_01278870.1\| Ribosomal protein S12 [Mycobacterium sp. JLS], gi\|92432182\|gb\|EAS9151... gi\|92438565, gi\|... - gi\|92917301\|ref\|ZP_01285915.1\| Ribosomal protein S12 [Mycobacterium sp. KMS], gi\|92438565\|gb\|EAS9641...	209.0	[0..8]	[134..131]
gi\|89359806, gi\|... - gi\|89359806\|ref\|ZP_01197626.1\| Ribosomal protein S12, bacterial and chloroplast form [Xanthobacter a...	209.0	[0..11]	[134..14]
gi\|56313632, gi\|... - gi\|56477589\|ref\|YP_159178.1\| 30S ribosomal protein S12 [Azoarcus sp. EbN1], gi\|56313632\|emb\|CAI08277...	208.0	[0..9]	[134..10]
gi\|116227369, gi... - gi\|67934344\|ref\|ZP_00527411.1\| Ribosomal protein S12, bacterial and chloroplast form [Solibacter usi...	207.0	[0..6]	[134..15]
gi\|15889246, gi\|... - gi\|15889246\|ref\|NP_354927.1\| 30S ribosomal protein S12 [Agrobacterium tumefaciens str. C58], gi\|1515... gi\|25294702 - gi\|25294702\|pir\|\|G97594 hypothetical protein AGR_C_3561 [imported] - Agrobacterium tumefaciens (stra...	207.0	[0..6]	[134..8]
gi\|33575063, gi\|... - gi\|33599017\|ref\|NP_886577.1\| 30S ribosomal protein S12 [Bordetella bronchiseptica RB50], gi\|33575063...	207.0	[0..9]	[134..19]
RS12_TRIEI - 30S ribosomal protein S12 OS=Trichodesmium erythraeum (strain IMS101) GN=rpsL PE=3 SV=1	207.0	[0..12]	[134..1]
RS12_MAGSA - 30S ribosomal protein S12 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rpsL PE=3 S...	206.0	[0..12]	[134..1]
gi\|69216533 - gi\|69216533\|gb\|AAZ03932.1\| ribosomal protein S12 [Ginkgo biloba]	206.0	[0..12]	[134..1]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTRFFKEEG SMPTVNQLIR KPRTAPVKRN KVPALQANPQ KRGVCTRVYT TTPKKPNSAL  60
   61 RKVAKVRLTN GFEVIGYIPG EGHNLQEHSV VMIRGGRVKD LPGVRYHIIR GVLDTQGVKN 120
  121 RKQRRSKYGA KRPK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.522879
Match:	1vs5L
Description:	No description for 1vs5L was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	7.45319063235379	bayes_pls_golite062009
structural molecule activity	6.87843523680097	bayes_pls_golite062009
misfolded RNA binding	4.4877915495248	bayes_pls_golite062009
nucleic acid binding	3.7132569326175	bayes_pls_golite062009
RNA binding	3.30183895019873	bayes_pls_golite062009
DNA binding	2.94486937698231	bayes_pls_golite062009
	2.80746531284205	bayes_pls_golite062009
binding	2.40532042551671	bayes_pls_golite062009
mRNA binding	1.65819015373151	bayes_pls_golite062009
translation regulator activity	1.46320772716954	bayes_pls_golite062009
translation factor activity, nucleic acid binding	1.40718318783582	bayes_pls_golite062009
translation initiation factor activity	1.27539679024898	bayes_pls_golite062009
transcription regulator activity	1.24522359765541	bayes_pls_golite062009
protein binding	1.20309946451799	bayes_pls_golite062009
structure-specific DNA binding	1.10289736160471	bayes_pls_golite062009
single-stranded DNA binding	0.96886436248958	bayes_pls_golite062009
ribonuclease activity	0.91658673456122	bayes_pls_golite062009
transcription factor activity	0.672797026326101	bayes_pls_golite062009
transcription activator activity	0.581984534552921	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	0.474251377131502	bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds	0.47336621289748	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	0.47336621289748	bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters	0.438266295385131	bayes_pls_golite062009
exoribonuclease activity	0.39131721416336	bayes_pls_golite062009
sequence-specific DNA binding	0.3506031439435	bayes_pls_golite062009
nuclease activity	0.17660139576327	bayes_pls_golite062009
RNA polymerase activity	0.1542034177713	bayes_pls_golite062009
DNA-directed RNA polymerase activity	0.1542034177713	bayes_pls_golite062009
transcription factor binding	0.132487446755259	bayes_pls_golite062009
3'-5'-exoribonuclease activity	0.0717589400404304	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: