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View Structure Prediction Details

Protein: DEAH4_ARATH
Organism: Arabidopsis thaliana
Length: 700 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DEAH4_ARATH.

Description E-value Query
Range		 Subject
Range
gi|187037454, gi... - gi|39596868|emb|CAE59095.1| Hypothetical protein CBG02387 [Caenorhabditis briggsae], gi|187037454|em...
gi|157752166 - gi|157752166|ref|XP_001679795.1| Hypothetical protein CBG02387 [Caenorhabditis briggsae AF16]
 584.0 [0..3] [676..544]

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Predicted Domain #1
Region A:
Residues: [1-359] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANLPILQFE EKIVETVEKN SVVVIIGETG SGKSTQLSQI LHRHGYTKSG VIAITQPRRV  60
   61 AAVSVARRVA QELDVPLGED VGYAIRFEDR TTSKTRIKYL TDGVLLRESL SNPMLDDYSV 120
  121 IILDEAHERS LNTDILLGLV KRLVRIRASN FKVLITSATL DGEKVSEFFS GCPVLNVPGK 180
  181 LYPVEILYSK ERPVSYIESS LKVAIDIHVR EPEGDILIFM TGQDDIEKLV SRLEEKVRSL 240
  241 AEGSCMDAII YPLHGSLPPE MQVRVFSPPP PNCRRFIVST NIAETSLTVD GVVYVIDSGY 300
  301 VKQRQYNPSS GMFSLDVIQI SKVQANQRAG RAGRTRPGKC YRLYPLAVYR DDFLDATIP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 56.39794
Match: 2hyiC
Description: No description for 2hyiC was found.

Predicted functions:

Term Confidence Notes
4.704140727858 bayes_pls_golite062009
binding 2.44689197844883 bayes_pls_golite062009
RNA binding 2.29590582680214 bayes_pls_golite062009
structural constituent of ribosome 1.57653963868443 bayes_pls_golite062009
RNA helicase activity 1.42791449104435 bayes_pls_golite062009
nucleic acid binding 1.41477043612798 bayes_pls_golite062009
RNA-dependent ATPase activity 1.39335733374328 bayes_pls_golite062009
ATP-dependent RNA helicase activity 1.36724390116598 bayes_pls_golite062009
DNA binding 1.11699929651302 bayes_pls_golite062009
catalytic activity 1.00104173493322 bayes_pls_golite062009
transcription regulator activity 0.989226939888218 bayes_pls_golite062009
mRNA binding 0.76699944561918 bayes_pls_golite062009
helicase activity 0.6191010101321 bayes_pls_golite062009
motor activity 0.61636596887462 bayes_pls_golite062009
structural molecule activity 0.596382945962261 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 0.461763181659193 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0.458831409927227 bayes_pls_golite062009
pyrophosphatase activity 0.455976987338331 bayes_pls_golite062009
nucleoside-triphosphatase activity 0.422944846459286 bayes_pls_golite062009
snRNA binding 0.418985924846052 bayes_pls_golite062009
general RNA polymerase II transcription factor activity 0.338958888186454 bayes_pls_golite062009
purine NTP-dependent helicase activity 0.29664013896754 bayes_pls_golite062009
ATP-dependent helicase activity 0.29664013896754 bayes_pls_golite062009
translation release factor activity 0.178286731022211 bayes_pls_golite062009
translation termination factor activity 0.151456842619444 bayes_pls_golite062009
nucleotide binding 0.114848452385726 bayes_pls_golite062009
purine nucleotide binding 0.10713474095071 bayes_pls_golite062009
purine ribonucleotide binding 0.0916519414118148 bayes_pls_golite062009
ribonucleotide binding 0.0915913646217636 bayes_pls_golite062009
protein binding 0.071010918255742 bayes_pls_golite062009
transcription factor activity 0.0434163635422169 bayes_pls_golite062009
cytoskeletal protein binding 0.0272673919333979 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [360-536] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EIQRTSLAGS VLYLKSLDLP DIDILKFDFL DAPSSESLED ALKQLYFIDA IDENGAITRI  60
   61 GRTMSDLPLE PSLSRTLIEA NETGCLSQAL TVVAMLSAET TLLPARSKPS EKKRKHDEDS 120
  121 NLPNGSGYGD HIQLLQIFES WDRTNYDPVW CKENGMQVRG MVFVKDVRRQ LCQIMQK

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.3
Match: 2v8oA
Description: No description for 2v8oA was found.

Predicted Domain #3
Region A:
Residues: [537-700] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISKDRLEVGA DGRKSSSRDD YRKLRKALCV GNANQIAERM LRHNGYRTLS FQSQLVQVHP  60
   61 SSVLSADNDG MMPNYVVYHE LISTTRPFMR NVCAVDMAWV APIKRKIEKL NVRKLSGGPA 120
  121 PSFKVPEEKT ELSKNNAETP AVSENVESRI EAARERFLAR KGQK

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 23.136677
Match: PF07717.7
Description: No description for PF07717.7 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle