| Protein: | VPS25_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 179 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS25_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
272.0 | [0..6] | [177..189] |
|
Region A: Residues: [1-179] |
1 11 21 31 41 51
| | | | | |
1 MQKLADFKLP QFFNYPPYFT LQPVRDTREK QIQLWKELIL DYCKSQKIFL IGVEEDFPLF 60
61 SNSAIDRSLS HEARETFLSA IVGEGRAEWL DKGHRKCLIL WHRIQDWADI VLQFVRDNGL 120
121 EDSVMTVEEI RSGTESLGTE LQGIDRTILM RALKLLENKG KLALFKGTSA DDEGVKFSV
|
| Detection Method: |  |
| Confidence: | 55.69897 |
| Match: | 1u5tC |
| Description: | Structure of the ESCRT-II endosomal trafficking complex |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.55329976718261 | bayes_pls_golite062009 |
| DNA binding | 5.08959163553491 | bayes_pls_golite062009 |
| nucleic acid binding | 4.99681957904233 | bayes_pls_golite062009 |
| transcription factor activity | 4.33152142980289 | bayes_pls_golite062009 |
| transcription repressor activity | 3.85678231380989 | bayes_pls_golite062009 |
| binding | 3.52874320222492 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.60738445921725 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.48053910222825 | bayes_pls_golite062009 |
| transcription activator activity | 2.37668609508629 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 1.35380365970626 | bayes_pls_golite062009 |
| transferase activity | 1.0863867010063 | bayes_pls_golite062009 |
| molecular transducer activity | 0.968719315363638 | bayes_pls_golite062009 |
| signal transducer activity | 0.968719315363638 | bayes_pls_golite062009 |
| specific transcriptional repressor activity | 0.96257232341735 | bayes_pls_golite062009 |
| transcription factor binding | 0.85714789329232 | bayes_pls_golite062009 |
| protein binding | 0.753698599635855 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.66743181561551 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.322180400748724 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 0.23177057841536 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.217544912085963 | bayes_pls_golite062009 |
| hydrolase activity | 0.140191206949582 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.136726704233672 | bayes_pls_golite062009 |
