YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|218193759
Organism: Oryza sativa Indica Group
Length: 570 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218193759.

Description E-value Query
Range		 Subject
Range
TADA2_ORYSJ - Transcriptional adapter ADA2 OS=Oryza sativa subsp. japonica GN=ADA2 PE=2 SV=2
ADA2_ORYSA - Transcriptional adapter ADA2 - Oryza sativa (Rice)
 415.0 [0..1] [570..1]

Back

Predicted Domain #1
Region A:
Residues: [1-284] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRSRGVPNS GDDETNHRSK RRRVASSGDA PDSLSAACGG AGEGGGKKAL YHCNYCNKDI  60
   61 SGKIRIKCSK CPDFDLCVEC FSVGAEVTPH RSNHPYRVMD NLSFPLICPD WNADEEILLL 120
  121 EGIEMYGLGN WAEVAEHVGT KTKAQCIDHY TTAYMNSPCY PLPDMSHVNG KNRKELLAMA 180
  181 KVQGESKKGT SVLPGDLTPK DESPFSPPRV KVEDALGEGL AGRSPSHIAG GANKKASNVG 240
  241 QFKDGANVAK VEDGHVDRSI GVKKPRYSAD EGPSLTELSG YNSK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.221849
Match: 1h88C
Description: c-Myb, DNA-binding domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
histone acetyltransferase activity 5.80609397811031 bayes_pls_golite062009
lysine N-acetyltransferase activity 5.80609397811031 bayes_pls_golite062009
general RNA polymerase II transcription factor activity 5.49431089902672 bayes_pls_golite062009
transcription regulator activity 5.13863038737912 bayes_pls_golite062009
DNA binding 4.66369707598026 bayes_pls_golite062009
N-acyltransferase activity 4.57418118498868 bayes_pls_golite062009
nucleic acid binding 4.51452285155271 bayes_pls_golite062009
N-acetyltransferase activity 4.37954729923498 bayes_pls_golite062009
transcription factor activity 4.06706589695599 bayes_pls_golite062009
acetyltransferase activity 3.80908511328212 bayes_pls_golite062009
acyltransferase activity 3.35206890637362 bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups 3.30532537006075 bayes_pls_golite062009
RNA polymerase II transcription factor activity 3.16896789933192 bayes_pls_golite062009
transferase activity, transferring acyl groups 3.08442186629685 bayes_pls_golite062009
binding 3.02779747447702 bayes_pls_golite062009
sequence-specific DNA binding 2.41271657675151 bayes_pls_golite062009
transcription repressor activity 1.91962622287073 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 1.85172306285414 bayes_pls_golite062009
transcription activator activity 1.77700860354597 bayes_pls_golite062009
specific RNA polymerase II transcription factor activity 1.73068440195944 bayes_pls_golite062009
chromatin binding 1.68956710349366 bayes_pls_golite062009
DNA-directed RNA polymerase activity 1.4315541802752 bayes_pls_golite062009
RNA polymerase activity 1.4315541802752 bayes_pls_golite062009
transcription factor binding 1.40653841901929 bayes_pls_golite062009
protein deacetylase activity 1.23680480131205 bayes_pls_golite062009
histone deacetylase activity 1.18932416576802 bayes_pls_golite062009
transcription cofactor activity 0.84983974758882 bayes_pls_golite062009
protein binding 0.830419844171551 bayes_pls_golite062009
histone binding 0.557787598121402 bayes_pls_golite062009
deacetylase activity 0.530687254192222 bayes_pls_golite062009
nucleotidyltransferase activity 0.292409156157916 bayes_pls_golite062009
transcription coactivator activity 0.2679415219517 bayes_pls_golite062009
transcription corepressor activity 0.25931464844298 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [285-478] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RHEFDPEYDN DAEQALAEME FKETDSETDR ELKLRVLRIY LSRLDERKRR KEFILERNLL  60
   61 FPNPLEKDLT NEDKEVYHRY KVFMRFLSKE EHEALVRSVL EERKIRRRIQ ELQECRSAGC 120
  121 RTLAEAKIHI EQKRKKEHEV NAQKAKESGQ LLSNTKVVHK TNRPMKIESD GNLDQKKGGA 180
  181 SLDSTGRDSP KTTG

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.03
Match: 1rh1A
Description: crystal structure of the cytotoxic bacterial protein colicin B at 2.5 A resolution
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [479-570] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HAGTKHWDDW DIVGFPGAEL LSTSEKNLCC QNRLLPNHYL KMQEVLMQEI FKGSVAKKED  60
   61 AHVLFKVDPA KVDNVYDMVT KKLGTNEEAP TV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.30103
Match: 2cujA
Description: Solution structure of SWIRM domain of mouse transcriptional adaptor 2-like
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
histone acetyltransferase activity 5.80609397811031 bayes_pls_golite062009
lysine N-acetyltransferase activity 5.80609397811031 bayes_pls_golite062009
general RNA polymerase II transcription factor activity 5.49431089902672 bayes_pls_golite062009
transcription regulator activity 5.13863038737912 bayes_pls_golite062009
DNA binding 4.66369707598026 bayes_pls_golite062009
N-acyltransferase activity 4.57418118498868 bayes_pls_golite062009
nucleic acid binding 4.51452285155271 bayes_pls_golite062009
N-acetyltransferase activity 4.37954729923498 bayes_pls_golite062009
transcription factor activity 4.06706589695599 bayes_pls_golite062009
acetyltransferase activity 3.80908511328212 bayes_pls_golite062009
acyltransferase activity 3.35206890637362 bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups 3.30532537006075 bayes_pls_golite062009
RNA polymerase II transcription factor activity 3.16896789933192 bayes_pls_golite062009
transferase activity, transferring acyl groups 3.08442186629685 bayes_pls_golite062009
binding 3.02779747447702 bayes_pls_golite062009
sequence-specific DNA binding 2.41271657675151 bayes_pls_golite062009
transcription repressor activity 1.91962622287073 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 1.85172306285414 bayes_pls_golite062009
transcription activator activity 1.77700860354597 bayes_pls_golite062009
specific RNA polymerase II transcription factor activity 1.73068440195944 bayes_pls_golite062009
chromatin binding 1.68956710349366 bayes_pls_golite062009
DNA-directed RNA polymerase activity 1.4315541802752 bayes_pls_golite062009
RNA polymerase activity 1.4315541802752 bayes_pls_golite062009
transcription factor binding 1.40653841901929 bayes_pls_golite062009
protein deacetylase activity 1.23680480131205 bayes_pls_golite062009
histone deacetylase activity 1.18932416576802 bayes_pls_golite062009
transcription cofactor activity 0.84983974758882 bayes_pls_golite062009
protein binding 0.830419844171551 bayes_pls_golite062009
histone binding 0.557787598121402 bayes_pls_golite062009
deacetylase activity 0.530687254192222 bayes_pls_golite062009
nucleotidyltransferase activity 0.292409156157916 bayes_pls_golite062009
transcription coactivator activity 0.2679415219517 bayes_pls_golite062009
transcription corepressor activity 0.25931464844298 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle