YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254259564, gi...
Organism:	Burkholderia pseudomallei 1710a
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254259564, gi....

Description	E-value	Query Range	Subject Range
gi\|71730663, gi\|... - gi\|71899534\|ref\|ZP_00681690.1\| Ribosomal protein S12, bacterial and chloroplast form [Xylella fastid...	198.0	[0..1]	[124..42]
gi\|74275829, gi\|... - gi\|75437463\|ref\|ZP_00733433.1\| 30S ribosomal protein S12 [Actinobacillus succinogenes 130Z], gi\|7427...	196.0	[0..1]	[124..19]
gi\|56313632, gi\|... - gi\|56477589\|ref\|YP_159178.1\| 30S ribosomal protein S12 [Azoarcus sp. EbN1], gi\|56313632\|emb\|CAI08277...	196.0	[0..1]	[125..13]
gi\|33575063, gi\|... - gi\|33599017\|ref\|NP_886577.1\| 30S ribosomal protein S12 [Bordetella bronchiseptica RB50], gi\|33575063...	194.0	[0..1]	[125..22]
RS12_VIBCB - 30S ribosomal protein S12 OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) GN=rpsL PE=3 SV=1 gi\|163802784, gi... - gi\|163802784\|ref\|ZP_02196674.1\| 30S ribosomal protein S12 [Vibrio campbellii AND4], gi\|159173491\|gb\|... RS12_VIBPA - 30S ribosomal protein S12 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=rpsL PE... gi\|90437894, gi\|... - gi\|90580823\|ref\|ZP_01236625.1\| 30S ribosomal protein S12 [Vibrio angustum S14], gi\|90437894\|gb\|EAS63... RS12_VIBPA - 30S ribosomal protein S12 OS=Vibrio parahaemolyticus GN=rpsL PE=3 SV=1 gi\|89049064, gi\|... - gi\|89075242\|ref\|ZP_01161673.1\| 30S ribosomal protein S12 [Photobacterium sp. SKA34], gi\|89049064\|gb\|...	194.0	[0..1]	[124..1]
RS12_CUPPJ - 30S ribosomal protein S12 OS=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) GN=rpsL PE=3 SV=...	194.0	[0..1]	[125..1]
RS12_CUPMC - 30S ribosomal protein S12 OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 /...	193.0	[0..1]	[125..1]
RS12_CUPNH - 30S ribosomal protein S12 OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) G... RS12_CUPTR - 30S ribosomal protein S12 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rpsL PE=3 SV=1 RS12_CUPTR - 30S ribosomal protein S12 OS=Cupriavidus taiwanensis (strain DSM 17343 / BCRC 17206 / CIP 107171 / L...	193.0	[0..1]	[125..1]
RS12_VIBVU - 30S ribosomal protein S12 OS=Vibrio vulnificus (strain CMCP6) GN=rpsL PE=3 SV=1 RS12_VIBVY - 30S ribosomal protein S12 OS=Vibrio vulnificus (strain YJ016) GN=rpsL PE=3 SV=1 RS12_VIBVU - 30S ribosomal protein S12 OS=Vibrio vulnificus GN=rpsL PE=3 SV=1	193.0	[0..1]	[124..1]
gi\|69216533 - gi\|69216533\|gb\|AAZ03932.1\| ribosomal protein S12 [Ginkgo biloba]	192.0	[0..1]	[123..1]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTINQLVRK GRASETTKSK SPALQDCPQR RGVCTRVYTT TPKKPNSALR KVAKVRLTNG  60
   61 FEVISYIGGE GHNLQEHSVV LIRGGRVKDL PGVRYHMVRG SLDTQGVKDR KQARSKYGAK 120
  121 RAKAAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.522879
Match:	1vs5L
Description:	No description for 1vs5L was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	7.45319063235379	bayes_pls_golite062009
structural molecule activity	6.87843523680097	bayes_pls_golite062009
misfolded RNA binding	4.4877915495248	bayes_pls_golite062009
nucleic acid binding	3.7132569326175	bayes_pls_golite062009
RNA binding	3.30183895019873	bayes_pls_golite062009
DNA binding	2.94486937698231	bayes_pls_golite062009
	2.80746531284205	bayes_pls_golite062009
binding	2.40532042551671	bayes_pls_golite062009
mRNA binding	1.65819015373151	bayes_pls_golite062009
translation regulator activity	1.46320772716954	bayes_pls_golite062009
translation factor activity, nucleic acid binding	1.40718318783582	bayes_pls_golite062009
translation initiation factor activity	1.27539679024898	bayes_pls_golite062009
transcription regulator activity	1.24522359765541	bayes_pls_golite062009
protein binding	1.20309946451799	bayes_pls_golite062009
structure-specific DNA binding	1.10289736160471	bayes_pls_golite062009
single-stranded DNA binding	0.96886436248958	bayes_pls_golite062009
ribonuclease activity	0.91658673456122	bayes_pls_golite062009
transcription factor activity	0.672797026326101	bayes_pls_golite062009
transcription activator activity	0.581984534552921	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	0.474251377131502	bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds	0.47336621289748	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	0.47336621289748	bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters	0.438266295385131	bayes_pls_golite062009
exoribonuclease activity	0.39131721416336	bayes_pls_golite062009
sequence-specific DNA binding	0.3506031439435	bayes_pls_golite062009
nuclease activity	0.17660139576327	bayes_pls_golite062009
RNA polymerase activity	0.1542034177713	bayes_pls_golite062009
DNA-directed RNA polymerase activity	0.1542034177713	bayes_pls_golite062009
transcription factor binding	0.132487446755259	bayes_pls_golite062009
3'-5'-exoribonuclease activity	0.0717589400404304	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: