| Protein: | gi|190689913, gi... |
| Organism: | synthetic construct |
| Length: | 463 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190689913, gi....
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..463] | [1..463] |
|
|
0.0 | [1..463] | [1..463] |
|
|
0.0 | [1..463] | [1..463] |
|
|
0.0 | [1..463] | [1..463] |
|
|
0.0 | [1..463] | [1..463] |
|
|
0.0 | [1..463] | [1..463] |
|
|
0.0 | [1..463] | [1..463] |
|
|
0.0 | [1..463] | [1..469] |
|
Region A: Residues: [1-130] |
1 11 21 31 41 51
| | | | | |
1 MYGNYSHFMK FPAGYGGSPG HTGSTSMSPS AALSTGKPMD SHPSYTDTPV SAPRTLSAVG 60
61 TPLNALGSPY RVITSAMGPP SGALAAPPGI NLVAPPSSQL NVVNSVSSSE DIKPLPGLPG 120
121 IGNMNYPSTS
|
| Detection Method: |  |
| Confidence: | 1.43 |
| Match: | 2j63A |
| Description: | No description for 2j63A was found. |
|
Region A: Residues: [131-225] |
1 11 21 31 41 51
| | | | | |
1 PGSLVKHICA ICGDRSSGKH YGVYSCEGCK GFFKRTIRKD LIYTCRDNKD CLIDKRQRNR 60
61 CQYCRYQKCL VMGMKREAVQ EERQRSRERA ESEAE
|
| Detection Method: | |
| Confidence: | 21.69897 |
| Match: | 1ynwB |
| Description: | Crystal Structure of Vitmain D Receptor and 9-cis Retinoic Acid Receptor DNA-Binding Domains Bound to a DR3 Response Element |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [226-463] |
1 11 21 31 41 51
| | | | | |
1 CATSGHEDMP VERILEAELA VEPKTESYGD MNMENSTNDP VTNICHAADK QLFTLVEWAK 60
61 RIPHFSDLTL EDQVILLRAG WNELLIASFS HRSVSVQDGI LLATGLHVHR SSAHSAGVGS 120
121 IFDRVLTELV SKMKDMQMDK SELGCLRAIV LFNPDAKGLS NPSEVETLRE KVYATLEAYT 180
181 KQKYPEQPGR FAKLLLRLPA LRSIGLKCLE HLFFFKLIGD TPIDTFLMEM LETPLQIT
|
| Detection Method: | |
| Confidence: | 57.154902 |
| Match: | 1lbdA |
| Description: | LIGAND-BINDING DOMAIN OF THE HUMAN NUCLEAR RECEPTOR RXR-ALPHA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.53061626347066 | bayes_pls_golite062009 |
| DNA binding | 4.92165988569962 | bayes_pls_golite062009 |
| steroid hormone receptor activity | 4.81441024181511 | bayes_pls_golite062009 |
| nucleic acid binding | 4.78024150262074 | bayes_pls_golite062009 |
| transcription activator activity | 4.53302455129434 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 4.11614358606713 | bayes_pls_golite062009 |
| transcription factor activity | 4.0914094580319 | bayes_pls_golite062009 |
| nuclear hormone receptor binding | 3.91470119037087 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 3.89763470197726 | bayes_pls_golite062009 |
| binding | 3.85318710398432 | bayes_pls_golite062009 |
| transcription repressor activity | 3.83878598697109 | bayes_pls_golite062009 |
| hormone receptor binding | 3.79647267365529 | bayes_pls_golite062009 |
| molecular transducer activity | 3.57626193382263 | bayes_pls_golite062009 |
| signal transducer activity | 3.57626193382263 | bayes_pls_golite062009 |
| protein binding | 3.21524787168952 | bayes_pls_golite062009 |
| transcription activator binding | 2.98235973123409 | bayes_pls_golite062009 |
| estrogen receptor activity | 2.84886725099086 | bayes_pls_golite062009 |
| transcription factor binding | 2.68044489404568 | bayes_pls_golite062009 |
| receptor activity | 2.62895787183554 | bayes_pls_golite062009 |
| ecdysteroid hormone receptor activity | 2.54335605534182 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.38308182853979 | bayes_pls_golite062009 |
| transcription coactivator activity | 2.27959329058894 | bayes_pls_golite062009 |
| hormone binding | 2.22128813425565 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.73827483890179 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.70383793233433 | bayes_pls_golite062009 |
| retinoic acid receptor binding | 1.59968001933699 | bayes_pls_golite062009 |
| estrogen response element binding | 1.56094639526803 | bayes_pls_golite062009 |
| double-stranded DNA binding | 1.48246587604476 | bayes_pls_golite062009 |
| retinoid X receptor binding | 1.45560845709347 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.34794228300778 | bayes_pls_golite062009 |
| promoter binding | 1.28787959668198 | bayes_pls_golite062009 |
| palmitoyl-CoA hydrolase activity | 1.23181585568439 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.995333369475571 | bayes_pls_golite062009 |
| steroid binding | 0.933060984463406 | bayes_pls_golite062009 |
| retinoic acid receptor activity | 0.853869057774515 | bayes_pls_golite062009 |
| protein dimerization activity | 0.797229273848179 | bayes_pls_golite062009 |
| steroid hormone receptor binding | 0.754240851368212 | bayes_pls_golite062009 |
| retinoic acid binding | 0.676688935879073 | bayes_pls_golite062009 |
| protein N-terminus binding | 0.57701453824007 | bayes_pls_golite062009 |
| thyroid hormone receptor activity | 0.49784404390361 | bayes_pls_golite062009 |
| lipid binding | 0.475303782949439 | bayes_pls_golite062009 |
| protein heterodimerization activity | 0.45265806678057 | bayes_pls_golite062009 |
| vitamin D3 receptor activity | 0.428420599209378 | bayes_pls_golite062009 |
| receptor binding | 0.418843034756825 | bayes_pls_golite062009 |
| androgen receptor activity | 0.399730816072004 | bayes_pls_golite062009 |
| ligand-regulated transcription factor activity | 0.202197503742221 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 0.15737167800277 | bayes_pls_golite062009 |
| catalytic activity | 0.106902059021677 | bayes_pls_golite062009 |
| androgen binding | 0.0219623894804069 | bayes_pls_golite062009 |
