| Protein: | gi|190407638 |
| Organism: | Saccharomyces cerevisiae RM11-1a |
| Length: | 291 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190407638.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-50 | [1..291] | [1..291] |
|
|
4.0E-36 | [35..291] | [37..287] |
|
|
4.0E-36 | [35..291] | [37..259] |
|
|
1.0E-35 | [35..291] | [37..293] |
|
|
5.0E-35 | [35..291] | [37..293] |
|
Region A: Residues: [1-177] |
1 11 21 31 41 51
| | | | | |
1 MNSILDRNVR SSETTLIKPE SEFDNWLSDE NDGASHINVN KDSSSVLSAS SSTWFEPLEN 60
61 IISSASSSSI GSPIEDQFIS SNNEESALFP TDQFFSNPSS YSHSPEVSSS IKREEDDNAL 120
121 SLADFEPASL QLMPNMINTD NNDDSTPLKN EIELNDSFIK TNLDAKETKK RAPRKRL
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [178-291] |
1 11 21 31 41 51
| | | | | |
1 TPFQKQAHNK IEKRYRININ TKIARLQQII PWVASEQTAF EVGDSVKKQD EDGAETAATT 60
61 PLPSAAATST KLNKSMILEK AVDYILYLQN NERLYEMEVQ RLKSEIDTLK QDQK
|
| Detection Method: | |
| Confidence: | 45.70927 |
| Match: | 1am9A_ |
| Description: | SREBP-1a |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [178-291] |
1 11 21 31 41 51
| | | | | |
1 TPFQKQAHNK IEKRYRININ TKIARLQQII PWVASEQTAF EVGDSVKKQD EDGAETAATT 60
61 PLPSAAATST KLNKSMILEK AVDYILYLQN NERLYEMEVQ RLKSEIDTLK QDQK
|
| Detection Method: | |
| Confidence: | 19.39794 |
| Match: | 1nkpA |
| Description: | Myc prot-oncogene protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.38658950816179 | bayes_pls_golite062009 |
| DNA binding | 4.94162117310222 | bayes_pls_golite062009 |
| nucleic acid binding | 4.64041369991064 | bayes_pls_golite062009 |
| transcription factor activity | 4.57572673546692 | bayes_pls_golite062009 |
| binding | 3.81829206350975 | bayes_pls_golite062009 |
| protein binding | 2.64975291677725 | bayes_pls_golite062009 |
| transcription factor binding | 2.61163564741984 | bayes_pls_golite062009 |
| transcription activator activity | 2.5495467409976 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.48787404513864 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.23044824326772 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 2.07158271414494 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.52770895937238 | bayes_pls_golite062009 |
| promoter binding | 1.21602136735201 | bayes_pls_golite062009 |
| transcription repressor activity | 0.955588849035129 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.672485914465871 | bayes_pls_golite062009 |
| protein heterodimerization activity | 0.53175615551166 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.3655541712365 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.3513586903977 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.29436315000437 | bayes_pls_golite062009 |
| protein dimerization activity | 0.20674648626116 | bayes_pls_golite062009 |
