| Protein: | gi|208966756 |
| Organism: | synthetic construct |
| Length: | 309 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|208966756.
| Description | E-value | Query Range |
Subject Range |
|
|
6.0E-48 | [1..309] | [1..309] |
|
|
3.0E-47 | [1..309] | [1..309] |
|
|
6.0E-47 | [1..309] | [1..309] |
|
|
1.0E-45 | [1..308] | [1..308] |
|
|
1.0E-45 | [1..308] | [1..308] |
|
|
3.0E-42 | [1..308] | [1..308] |
|
|
5.0E-41 | [1..307] | [1..307] |
|
|
2.0E-38 | [1..306] | [1..310] |
|
Region A: Residues: [1-81] |
1 11 21 31 41 51
| | | | | |
1 MDDQGCPRCK TTKYRNPSLK LMVNVCGHTL CESCVDLLFV RGAGNCPECG TPLRKSNFRV 60
61 QLFEDPTVDK EVEIRKKVLK I
|
| Detection Method: |  |
| Confidence: | 8.0 |
| Match: | 1g25A |
| Description: | TFIIH Mat1 subunit |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 6.51043144330453 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 3.14238164427954 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 3.12673603940339 | bayes_pls_golite062009 |
| binding | 2.78710909602478 | bayes_pls_golite062009 |
| transcription regulator activity | 2.72498741013971 | bayes_pls_golite062009 |
| protein binding | 2.64803540957326 | bayes_pls_golite062009 |
| nucleic acid binding | 2.32387297115017 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 2.10988747259202 | bayes_pls_golite062009 |
| DNA binding | 2.00904221080834 | bayes_pls_golite062009 |
| transcription repressor activity | 1.98209395225978 | bayes_pls_golite062009 |
| transcription activator activity | 1.45530270292081 | bayes_pls_golite062009 |
| transcription factor activity | 1.22579085356684 | bayes_pls_golite062009 |
| transcription factor binding | 1.11842175076436 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.926364718530146 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.90321253993065 | bayes_pls_golite062009 |
| hydrolase activity | 0.52386813728704 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.384990496120483 | bayes_pls_golite062009 |
| ligase activity | 0.34187399168736 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.255669498391574 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.233838999434784 | bayes_pls_golite062009 |
| catalytic activity | 0.14112008370434 | bayes_pls_golite062009 |
| enzyme binding | 0.104373352314595 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 0.024993043379745 | bayes_pls_golite062009 |
|
Region A: Residues: [82-309] |
1 11 21 31 41 51
| | | | | |
1 YNKREEDFPS LREYNDFLEE VEEIVFNLTN NVDLDNTKKK MEIYQKENKD VIQKNKLKLT 60
61 REQEELEEAL EVERQENEQR RLFIQKEEQL QQILKRKNKQ AFLDELESSD LPVALLLAQH 120
121 KDRSTQLEMQ LEKPKPVKPV TFSTGIKMGQ HISLAPIHKL EEALYEYQPL QIETYGPHVP 180
181 ELEMLGRLGY LNHVRAASPQ DLAGGYTSSL ACHRALQDAF SGLFWQPS
|
| Detection Method: | |
| Confidence: | 5.39794 |
| Match: | 2i1jA |
| Description: | No description for 2i1jA was found. |
