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View Structure Prediction Details

Protein: gi|190691265, gi...
Organism: synthetic construct
Length: 172 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190691265, gi....

Description E-value Query
Range
Subject
Range
gi|73950125 - gi|73950125|ref|XP_535264.2| PREDICTED: similar to TAF9 RNA polymerase II, TATA box binding protein ...
2.0E-36 [1..172] [119..290]
gi|33303797 - gi|33303797|gb|AAQ02412.1| TAF9 RNA polymerase II, TATA box binding protein [synthetic construct]
1.0E-34 [1..172] [1..172]
gi|60593443 - gi|60593443|pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
1.0E-34 [1..172] [2..173]
gi|6457370 - gi|6457370|gb|AAF09498.1| unknown protein [Oryctolagus sp.]
KAD6_RABIT - Adenylate kinase isoenzyme 6 OS=Oryctolagus cuniculus GN=AK6 PE=2 SV=1
3.0E-34 [1..172] [1..172]
KAD6_MOUSE - Adenylate kinase isoenzyme 6 OS=Mus musculus GN=Ak6 PE=1 SV=1
1.0E-33 [1..171] [1..171]
gi|67678349, gi|... - gi|67678349|gb|AAH97802.1| MGC115514 protein [Xenopus laevis], gi|147899639|ref|NP_001089528.1| hypo...
2.0E-33 [1..171] [1..171]
KAD6_RAT - Adenylate kinase isoenzyme 6 OS=Rattus norvegicus GN=Ak6 PE=2 SV=1
2.0E-33 [1..171] [1..171]
gi|56753653 - gi|56753653|gb|AAW25029.1| unknown [Schistosoma japonicum]
2.0E-33 [1..171] [14..184]
gi|47939442, gi|... - gi|50344892|ref|NP_001002118.1| hypothetical protein LOC415208 [Danio rerio], gi|47939442|gb|AAH7147...
2.0E-33 [1..171] [1..171]

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Predicted Domain #1
Region A:
Residues: [1-172]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLPNILLTG TPGVGKTTLG KELASKSGLK YINVGDLARE EQLYDGYDEE YDCPILDEDR  60
   61 VVDELDNQMR EGGVIVDYHG CDFFPERWFH IVFVLRTDTN VLYERLETRG YNEKKLTDNI 120
  121 QCEIFQVLYE EATASYKEEI VHQLPSNKPE ELENNVDQIL KWIEQWIKDH NS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.09691
Match: 1rkbA
Description: The structure of adrenal gland protein AD-004
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
general RNA polymerase II transcription factor activity 5.47805400577115 bayes_pls_golite062009
lysine N-acetyltransferase activity 5.46449952222453 bayes_pls_golite062009
histone acetyltransferase activity 5.46449952222453 bayes_pls_golite062009
N-acetyltransferase activity 4.25864282850521 bayes_pls_golite062009
N-acyltransferase activity 4.00838185080866 bayes_pls_golite062009
acetyltransferase activity 3.73766943057668 bayes_pls_golite062009
acyltransferase activity 3.24721386513202 bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups 3.21286388740986 bayes_pls_golite062009
transferase activity, transferring acyl groups 3.04795936672801 bayes_pls_golite062009
binding 2.64537357529343 bayes_pls_golite062009
nucleic acid binding 2.09956015274464 bayes_pls_golite062009
transcription regulator activity 2.09345198747025 bayes_pls_golite062009
DNA binding 1.87765278833074 bayes_pls_golite062009
RNA helicase activity 1.42791449104435 bayes_pls_golite062009
RNA-dependent ATPase activity 1.39335733374328 bayes_pls_golite062009
ATP-dependent RNA helicase activity 1.36724390116598 bayes_pls_golite062009
purine ribonucleotide binding 1.2935968641033 bayes_pls_golite062009
ribonucleotide binding 1.2935353851804 bayes_pls_golite062009
purine nucleotide binding 1.29138695385133 bayes_pls_golite062009
nucleotide binding 1.28669586915546 bayes_pls_golite062009
protein binding 1.22129154759482 bayes_pls_golite062009
transcription elongation regulator activity 1.11383295816593 bayes_pls_golite062009
catalytic activity 1.00104173493322 bayes_pls_golite062009
ATP binding 0.98146619596929 bayes_pls_golite062009
adenyl ribonucleotide binding 0.949788783884952 bayes_pls_golite062009
adenyl nucleotide binding 0.931486373329219 bayes_pls_golite062009
kinase activity 0.691112783105676 bayes_pls_golite062009
transcription factor activity 0.682439846757997 bayes_pls_golite062009
motor activity 0.677658554107 bayes_pls_golite062009
helicase activity 0.6191010101321 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.499834566483656 bayes_pls_golite062009
0.442119153778711 bayes_pls_golite062009
purine NTP-dependent helicase activity 0.29664013896754 bayes_pls_golite062009
ATP-dependent helicase activity 0.29664013896754 bayes_pls_golite062009
RNA polymerase II transcription factor activity 0.243902356228423 bayes_pls_golite062009
nucleotidyltransferase activity 0.181509771587324 bayes_pls_golite062009
nucleoside-triphosphatase activity 0.147579541298736 bayes_pls_golite062009
pyrophosphatase activity 0.133017653323467 bayes_pls_golite062009
microtubule motor activity 0.11674780318211 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 0.113504049290503 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0.111293884322157 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.0430764033739892 bayes_pls_golite062009
protein kinase activity 0.0364322017534667 bayes_pls_golite062009
RNA binding 0.0261282189186349 bayes_pls_golite062009

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